DELTA 305130 2932 162 SVNGGn`_c++|/m/Yx^0_ӿq$%%{sj- i!c"aZDs%򿯀r[||i{=1u@$H>$<TC|EĩE aRFc+k'JWc04F~2Ǯz5p1Ghџc0塏 #include #include -#include +#include extern vector scoreFunctions[1<<(UPSTRANDBITS+DOWNSTRANDBITS+RELPOSBITS)]; ENDREP DELTA SVN.0..--- src/utils/Glue.cpp.orig 2006-09-15 05:40:18.000000000 +0900 +++ src/utils/Glue.cpp 2012-10-03 00:23:38.000000000 +0900 @@ -6,6 +6,7 @@ #include #include #include +#include #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt" #define MAX_LINE_LENGTH 1024 ENDREP DELTA 157464 1764 486 SVNOTVTTThe Lagan Tookit is a set of alignment programs for comparative genomics. The three main components are a pairwise aligner (LAGAN), a multiple aligner (M-LAGAN), and a glocal aligner (Shuffle-LAGAN). All three are based on the CHAOS local alignment tool and combine speed (regions up to several megabases can be aligned in minutes) with high accuracy. The results of the alignment can be visualized using the VISTA visualization tool. 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