DELTA 327709 15554 234 SVN(1|sXNn<6x^PQK0|N~E(ħA5s%-ۊMna/!H8"E8%BR &=jvCUuE-BlUjQ5zb8RO'҇OhN#;|n{hI6=)Idlwͦj;ܳF$MsIxBe R&duˮ7D1>ni $\ z~vb68ԍZVEi!\,QОEbB%L-uJ3AqbW N<~Ny",/W0\U5*PQOW_K ENDREP DELTA 215429 1144 845 SVN9%]$W3 R\Ud[9,7 +79,8 @@ #include #include #include -#include +#include +#include #include #include #include @@ -726,8 +7277392ENDREP DELTA 215429 10269 401 SVN@30/ ]=141,6 +41,7 @@ #include #include #include +#include class SequenceReaderMulti; class SequenceReader; class HashTable; @@ -131,7 +1325ENDREP DELTA 215429 15526 374 SVNuHUuSS@@ -22,12 +22,12 @@ QUERY_DIR=${SSAHA_TOP_DIR}/QueryManager EXEC_DIR=${SSAHA_TOP_DIR}/Executables -CCC = g++ +CCC ?= g++ # !!!! change -g to -O3 before making deliverable %%%% # NB use -ggdb to get gdb to work INCLUDE_PATHS = -I${SSAHA_TOP_DIR} \ -I${GLOBAL_DIR} -I${SEQ_DIR} -I${HASH_DIR} -I${QUERY_DIR} -OPTIM = -O3 +OPTIM ?= -O3 DEBUG_LEVEL = # DEBUG_LEVEL = -DEBUG_LEVEL1 # -D_REENTRANT necessary for thread safety - see pthread man page - 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