DELTA SVNƒƒ€ƒƒ--- Makefile.orig 2013-03-17 11:38:57.213776000 +0000 +++ Makefile @@ -13,7 +13,7 @@ RFLAGS = -DRELEASE=$(COV_RELEASE) -D ## greatly speeding scans of unfinished sequence ## where Perl v.5 (or greater) is installed -PERLDIR = /usr/bin +PERLDIR = $(PREFIX)/bin ## what you call the Perl v.5 executable on your system ## (this could be 'perl5' or otherwise on some systems) ENDREP id: 5-342905.0.r342905/414 type: file count: 0 text: 342905 0 401 384 9a2ab1ad8302d471c21781fc6f906798 1febc2dee29e2e8e413c7cf17aa470e891e8ef9c 342904-7cle/_7 props: 334546 1627 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/tRNAscan-SE/files/patch-Makefile copyroot: 0 / PLAIN K 14 patch-Makefile V 27 file 5-342905.0.r342905/414 END ENDREP id: 3-342905.0.r342905/769 type: dir count: 0 text: 342905 699 57 0 43331c77b31cc3f66aef16bbb5758764 cpath: /head/biology/tRNAscan-SE/files copyroot: 0 / PLAIN K 8 Makefile V 28 file 5-56741.0.r327709/78310 K 8 distinfo V 29 file 8-56741.0.r340717/841795 K 5 files V 26 dir 3-342905.0.r342905/769 K 9 pkg-descr V 29 file g-56741.0.r340718/888016 END ENDREP id: 4-56741.0.r342905/1127 type: dir pred: 4-56741.0.r340718/888486 count: 16 text: 342905 924 190 0 35da95ea613b65b6ae58b52106e7e9ee cpath: /head/biology/tRNAscan-SE copyroot: 0 / PLAIN K 8 Makefile V 26 file 3-9066.0.r333374/2461 K 7 ariadne V 29 dir 4-111985.0.r340718/834533 K 7 artemis V 28 dir 4-51988.0.r340718/835232 K 5 avida V 28 dir 4-57919.0.r340718/835921 K 5 babel V 27 dir 2-9147.0.r340851/208595 K 8 biococoa V 29 dir 4-181036.0.r340722/479675 K 7 biojava V 28 dir 4-33667.0.r340722/480375 K 5 blast V 29 dir 5-121414.0.r340719/160089 K 4 blat V 29 dir 4-157190.0.r340719/161056 K 11 boinc-simap V 27 dir 4-165801.0.r342580/8680 K 6 chemeq V 29 dir 5-153895.0.r340722/481024 K 8 clustalw V 28 dir 2-30406.0.r340722/481714 K 6 consed V 29 dir 4-213590.0.r340725/965864 K 4 crux V 29 dir 4-235460.0.r340722/482420 K 7 embassy V 29 dir 4-122510.0.r340718/843708 K 6 emboss V 28 dir 4-31178.0.r340851/210830 K 5 fasta V 28 dir 4-38205.0.r340725/968094 K 6 fasta3 V 28 dir 4-38207.0.r340725/969348 K 9 fastdnaml V 28 dir 4-33727.0.r340722/483857 K 7 finchtv V 29 dir 4-130938.0.r340719/165544 K 9 fluctuate V 28 dir 4-45885.0.r340725/970323 K 6 garlic V 28 dir 4-85720.0.r340725/971341 K 6 genpak V 28 dir 4-38875.0.r340725/972725 K 6 gff2ps V 28 dir 4-51813.0.r340722/486690 K 4 gmap V 29 dir 4-174086.0.r340725/973746 K 9 gperiodic V 28 dir 2-21330.0.r340718/850908 K 6 grappa V 28 dir 4-44738.0.r340718/851597 K 5 hmmer V 28 dir 2-11871.0.r340719/166293 K 5 iolib V 27 dir 4-240487.0.r340411/1259 K 7 jalview V 29 dir 4-155905.0.r340851/211907 K 5 lagan V 29 dir 4-157464.0.r340719/167469 K 6 lamarc V 28 dir 4-45915.0.r340725/975890 K 9 libgenome V 28 dir 4-63725.0.r340725/976908 K 7 libsbml V 29 dir 4-234730.0.r340725/977938 K 19 linux-foldingathome V 29 dir 4-171590.0.r340851/212911 K 5 mafft V 29 dir 4-157209.0.r340722/489611 K 5 mapm3 V 29 dir 4-210625.0.r340725/987137 K 7 migrate V 26 dir 4-45878.0.r341721/1374 K 6 molden V 28 dir 2-18587.0.r340725/989462 K 5 mopac V 28 dir 2-18535.0.r340725/990877 K 7 mrbayes V 29 dir 4-203737.0.r340725/991850 K 6 mummer V 29 dir 4-203638.0.r340722/491705 K 6 muscle V 29 dir 4-213031.0.r340725/993599 K 12 ncbi-toolkit V 28 dir 4-34402.0.r340719/168687 K 6 njplot V 29 dir 4-213034.0.r340725/994573 K 6 ortep3 V 28 dir 2-18887.0.r340725/995592 K 10 p5-AcePerl V 25 dir 4-31083.0.r342799/886 K 22 p5-Bio-ASN1-EntrezGene V 29 dir 4-145476.0.r340718/863799 K 10 p5-Bio-Das V 29 dir 4-141702.0.r340718/864522 K 15 p5-Bio-Das-Lite V 26 dir 4-250445.0.r341804/958 K 11 p5-Bio-GFF3 V 27 dir 4-273031.0.r340794/1453 K 12 p5-Bio-Glite V 29 dir 4-231492.0.r340718/866661 K 15 p5-Bio-Graphics V 29 dir 4-229849.0.r340718/867382 K 14 p5-Bio-MAGETAB V 29 dir 4-236853.0.r340718/868098 K 12 p5-Bio-NEXUS V 27 dir 4-240135.0.r341989/7474 K 12 p5-Bio-Phylo V 29 dir 4-162248.0.r340718/869527 K 10 p5-Bio-SCF V 29 dir 4-240489.0.r340717/825261 K 10 p5-bioperl V 28 dir 4-31084.0.r340725/998800 K 14 p5-bioperl-run V 29 dir 4-161213.0.r340718/870995 K 4 paml V 28 dir 2-30407.0.r340722/495121 K 9 phd2fasta V 29 dir 4-213592.0.r340725/999782 K 5 phrap V 30 dir 4-213596.0.r340725/1000761 K 5 phred V 30 dir g-213596.0.r340725/1001739 K 6 phylip V 28 dir 2-30408.0.r340718/874494 K 5 phyml V 26 dir 4-238140.0.r341987/458 K 6 platon V 28 dir 2-18586.0.r340722/498524 K 5 plink V 27 dir 4-304954.0.r336328/2748 K 8 plinkseq V 26 dir g-304954.0.r341988/596 K 7 povchem V 29 dir 2-10173.0.r340725/1002739 K 7 primer3 V 28 dir 4-66513.0.r340718/877222 K 8 protomol V 30 dir 4-161442.0.r340725/1003832 K 5 psi88 V 29 dir 2-18534.0.r340725/1005612 K 12 py-biopython V 28 dir 4-31163.0.r340722/501125 K 8 pycogent V 29 dir 4-236469.0.r340722/501838 K 7 pyfasta V 26 dir 4-244412.0.r341984/547 K 5 pymol V 29 dir 4-64463.0.r340725/1006633 K 12 python-nexus V 26 dir 4-246859.0.r341983/569 K 6 rasmol V 27 dir 2-9083.0.r340851/215691 K 9 recombine V 29 dir 4-45886.0.r340725/1008649 K 8 ruby-bio V 28 dir 4-49156.0.r340722/506138 K 7 seaview V 27 dir 2-9150.0.r340718/884996 K 5 seqan V 30 dir 4-298619.0.r340725/1010170 K 5 seqio V 29 dir 4-46640.0.r340725/1012239 K 8 seqtools V 27 dir 5-333374.0.r337375/1011 K 4 sim4 V 28 dir 4-31064.0.r340722/507483 K 5 ssaha V 27 dir 4-215429.0.r341053/5648 K 11 tRNAscan-SE V 26 dir 4-56741.0.r342905/1127 K 8 t_coffee V 28 dir 4-53719.0.r340718/889181 K 6 tinker V 28 dir 2-14597.0.r340718/889910 K 10 treepuzzle V 28 dir 4-70552.0.r340722/508134 K 9 treeviewx V 28 dir 4-46356.0.r340718/891214 K 5 ugene V 27 dir 4-312798.0.r341837/1017 K 6 velvet V 30 dir 4-243919.0.r340725/1026263 K 4 wise V 26 dir 4-66053.0.r342903/1152 K 6 xmolwt V 28 dir 2-21329.0.r340718/893995 END ENDREP id: 1-9066.0.r342905/5788 type: dir pred: 1-9066.0.r342903/5808 count: 1605 text: 342905 1309 4466 0 b543eda25356263e63c83f6e5e381642 cpath: /head/biology copyroot: 0 / PLAIN K 7 CHANGES V 26 file 1-99373.0.r341696/265 K 9 COPYRIGHT V 25 file 1-146787.0.r340854/0 K 4 GIDs V 28 file 1-168311.0.r342481/2135 K 5 KNOBS V 27 file 1-147337.0.r328005/126 K 8 Keywords V 26 dir 1-314142.0.r340854/792 K 5 LEGAL V 25 file 1-748.0.r342008/2673 K 5 MOVED V 26 file 1-69878.0.r342683/228 K 8 Makefile V 22 file 1-6.0.r335781/123 K 2 Mk V 23 dir 1-5.0.r342632/21168 K 6 README V 25 file 1-2408.0.r340854/960 K 9 Templates V 25 dir 1-2932.0.r340851/8441 K 5 Tools V 26 dir 3-15302.0.r340914/3266 K 4 UIDs V 28 file 4-168311.0.r342481/2417 K 8 UPDATING V 28 file 1-102685.0.r342094/1359 K 13 accessibility V 26 dir 1-42583.0.r341894/2401 K 6 arabic V 27 dir 1-38973.0.r340722/16653 K 9 archivers V 25 dir 1-242.0.r342730/11671 K 5 astro V 24 dir 1-301.0.r342830/8897 K 5 audio V 25 dir 1-148.0.r342900/44496 K 10 benchmarks V 23 dir 1-62.0.r342249/5171 K 7 biology V 25 dir 1-9066.0.r342905/5788 K 3 cad V 24 dir 1-276.0.r342902/5641 K 7 chinese V 25 dir 1-3770.0.r342899/7784 K 5 comms V 24 dir 1-76.0.r342693/69347 K 10 converters V 26 dir 1-1561.0.r342693/83250 K 9 databases V 25 dir 1-771.0.r342904/52104 K 9 deskutils V 26 dir 1-2098.0.r342897/15419 K 5 devel V 25 dir 1-73.0.r342898/251274 K 3 dns V 26 dir 1-6145.0.r342623/10057 K 7 editors V 23 dir 4-6.0.r342882/17296 K 9 emulators V 25 dir 1-181.0.r342672/10448 K 7 finance V 26 dir 1-4110.0.r342468/15907 K 6 french V 26 dir 1-25673.0.r342574/2261 K 3 ftp V 24 dir 1-199.0.r342878/5809 K 5 games V 25 dir 1-104.0.r342884/60447 K 6 german V 25 dir 1-7451.0.r342715/3183 K 8 graphics V 24 dir 1-94.0.r342875/56445 K 6 hebrew V 29 dir 3-31142.0.r340725/5891793 K 9 hungarian V 27 dir 1p-38973.0.r341681/6757 K 3 irc V 23 dir 1-42.0.r342776/8028 K 8 japanese V 25 dir 1-410.0.r342846/18165 K 4 java V 25 dir 1-2798.0.r342173/8665 K 6 korean V 26 dir 1-5873.0.r342129/96844 K 4 lang V 24 dir 1-15.0.r342845/18996 K 4 mail V 24 dir 1-57.0.r342876/42683 K 4 math V 25 dir 1-162.0.r342842/36279 K 4 misc V 24 dir 7-35.0.r342840/26700 K 10 multimedia V 25 dir d-333.0.r342851/24759 K 3 net V 24 dir 1-22.0.r342820/68796 K 6 net-im V 28 dir 15-11144.0.r342828/10540 K 8 net-mgmt V 26 dir r-1011.0.r342701/19608 K 7 net-p2p V 26 dir g-29106.0.r342825/7364 K 4 news V 24 dir 1-145.0.r342826/5387 K 4 palm V 25 dir 1-6646.0.r342675/2522 K 6 polish V 29 dir tv-38973.0.r342129/130874 K 10 ports-mgmt V 25 dir 1-5132.0.r342535/6193 K 10 portuguese V 28 dir 1-17842.0.r342129/132895 K 5 print V 24 dir 1-79.0.r342719/17816 K 7 russian V 25 dir 1-1559.0.r342508/3992 K 7 science V 27 dir n-5356.0.r342830/113041 K 8 security V 25 dir 1-269.0.r342862/55362 K 6 shells V 22 dir w-6.0.r342195/5847 K 8 sysutils V 25 dir b-339.0.r342867/55467 K 8 textproc V 25 dir 1-322.0.r342822/86074 K 9 ukrainian V 27 dir g-39704.0.r341681/99379 K 10 vietnamese V 28 dir 1-4812.0.r340872/3457902 K 3 www V 26 dir 1-114.0.r342836/131022 K 3 x11 V 24 dir 1-16.0.r342869/26271 K 10 x11-clocks V 24 dir 1-931.0.r341748/7013 K 11 x11-drivers V 27 dir 1-157567.0.r342802/4133 K 6 x11-fm V 24 dir 1-691.0.r342132/2624 K 9 x11-fonts V 25 dir 1-543.0.r342805/10103 K 11 x11-servers V 26 dir 1n-710.0.r342436/74628 K 10 x11-themes V 27 dir 1-14410.0.r342603/10849 K 12 x11-toolkits V 25 dir 1-120.0.r342871/16027 K 6 x11-wm V 24 dir 1-40.0.r342469/10515 END ENDREP id: 2-1.0.r342905/9260 type: dir pred: 2-1.0.r342904/55579 count: 342176 text: 342905 5958 3289 0 75bc0bf73df417871a344bd91b7e900d props: 308235 235189 45 0 7a04b33bf8e35fd5c3d111baaf403dc5 cpath: /head copyroot: 0 / PLAIN K 8 branches V 24 dir 0-1.0.r342801/454646 K 4 head V 22 dir 2-1.0.r342905/9260 K 8 svnadmin V 22 dir 3-1.0.r342610/1240 K 4 tags V 22 dir 8-1.0.r336829/4760 END ENDREP id: 0.0.r342905/9653 type: dir pred: 0.0.r342904/55974 count: 342905 text: 342905 9478 162 0 8397091bc5d2eaa816313cfd9b417204 props: 341041 7140 346 0 8b695b9f61597e4917effffba3bbfaa3 cpath: / copyroot: 0 / minfo-cnt: 10 _3.0.t342904-7cle add-dir false false /head/biology/tRNAscan-SE/files _5.0.t342904-7cle add-file true true /head/biology/tRNAscan-SE/files/patch-Makefile 9653 9875