DELTA 240487 449 515 SVN†Qƒ<ƒ%€ƒ#†8ƒ## Created by: Wen Heping # $FreeBSD$ PORTNAME= io_lib PORTVERSION= 1.13.5 CATEGORIES= biology MASTER_SITES= SF/staden/${PORTNAME}/${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= General purpose trace file (and Experiment File) reading interface LICENSE= BSD3CLAUSE LIB_DEPENDS= libcurl.so:${PORTSDIR}/ftp/curl USES= gmake USE_AUTOTOOLS= libtool:env GNU_CONFIGURE= yes USE_LDCONFIG= yesENDREP DELTA 316940 370 153 SVNt€ss5.tar.gz) = 3e30f1e972d3d75c4efa54032ceca975cea9733ce1eef3982ee8a2b9f799ba56 SIZE (io_lib-1.13.5.tar.gz) = 1808537 ENDREP DELTA SVNSU€SS--- progs/scram_flagstat.c.orig +++ progs/scram_flagstat.c @@ -44,6 +44,7 @@ #include #include #include +#include #if defined(__MINGW32__) # include ENDREP DELTA 340411 184 198 SVN“ “L.‚-½;‰€W?Œ {‡riƒ„W‚B‡3Šˆ €X„|Ž$‚bin/append_sff bin/convert_trace bin/cram_dump bin/cram_indexcf_dump bin/scf_info bin/scf_update bin/scram_flagstat bin/scram_merge bin/scram_pileupbinningatshread_poollib/libstaden-read.a lib/libstaden-read.la lib/libstaden-read.so lib/libstaden-read.so.5ENDREP id: 5-240487.0.r352216/1213 type: file pred: 5-240487.0.r351071/54 count: 16 text: 352216 0 440 444 3db5b9ddcc76b3cb2067e3964c325868 0763efca7a13d280f92398b73a43227e23609caf 352215-7js1/_4 props: 316940 1529 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/iolib/Makefile copyroot: 0 / id: 8-240487.0.r352216/1511 type: file pred: 8-240487.0.r316940/2059 count: 6 text: 352216 468 132 135 bb8f3b81a32db3f3c2bcdc9acc9359fe a6d45b9b46f9ec956e3c5dec37c9e7ea35ff6185 352215-7js1/_5 props: 316940 1948 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/iolib/distinfo copyroot: 0 / id: 6-352216.0.r352216/1811 type: file count: 0 text: 352216 628 228 211 d40acfe7830ea9686e5608a14b58a901 0e4be930e787614efc22121109e116491adc6b07 352215-7js1/_8 props: 334546 1627 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/iolib/files/patch-progs__scram_flgstat.c copyroot: 0 / PLAIN K 26 patch-progs-scram__merge.c V 28 file 7-316940.0.r316940/2473 K 22 patch-progs-scramble.c V 28 file a-316940.0.r316940/2878 K 28 patch-progs__scram_flgstat.c V 28 file 6-352216.0.r352216/1811 END ENDREP id: 6-316940.0.r352216/2320 type: dir pred: 6-316940.0.r316940/3313 count: 1 text: 352216 2107 200 0 8ba5b0251d24c23a89d29c8915232d4e cpath: /head/biology/iolib/files copyroot: 0 / id: c-240487.0.r352216/2502 type: file pred: c-240487.0.r340411/710 count: 6 text: 352216 869 316 2508 5c68818c63642af96cb4c3d0d4afa397 5a9ce40cd8c310aa13b5b0bd6e9a13c8c8407f77 352215-7js1/_9 props: 316940 3882 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/iolib/pkg-plist copyroot: 0 / PLAIN K 8 Makefile V 28 file 5-240487.0.r352216/1213 K 8 distinfo V 28 file 8-240487.0.r352216/1511 K 5 files V 27 dir 6-316940.0.r352216/2320 K 9 pkg-descr V 28 file a-240487.0.r316940/3578 K 9 pkg-plist V 28 file c-240487.0.r352216/2502 END ENDREP id: 4-240487.0.r352216/3053 type: dir pred: 4-240487.0.r351071/597 count: 16 text: 352216 2803 237 0 366f70a6aab1a087524a0408fcd6daca cpath: /head/biology/iolib copyroot: 0 / PLAIN K 8 Makefile V 27 file 3-9066.0.r351531/12995 K 7 ariadne V 29 dir 4-111985.0.r340718/834533 K 7 artemis V 28 dir 4-51988.0.r340718/835232 K 5 avida V 28 dir 4-57919.0.r340718/835921 K 5 babel V 27 dir 2-9147.0.r340851/208595 K 8 biococoa V 29 dir 4-181036.0.r340722/479675 K 7 biojava V 25 dir 4-33667.0.r347521/554 K 5 blast V 29 dir 5-121414.0.r340719/160089 K 4 blat V 27 dir 4-157190.0.r347402/8702 K 11 boinc-simap V 27 dir 4-165801.0.r342580/8680 K 6 chemeq V 29 dir 5-153895.0.r340722/481024 K 8 clustalw V 28 dir 2-30406.0.r340722/481714 K 6 consed V 27 dir 4-213590.0.r345397/1761 K 4 crux V 29 dir 4-235460.0.r347809/170743 K 7 embassy V 29 dir 4-122510.0.r340718/843708 K 6 emboss V 28 dir 4-31178.0.r340851/210830 K 5 fasta V 26 dir 4-38205.0.r348924/1755 K 6 fasta3 V 26 dir 4-38207.0.r346755/1335 K 9 fastdnaml V 25 dir 4-33727.0.r344535/867 K 9 fluctuate V 25 dir 4-45885.0.r344536/741 K 6 garlic V 26 dir 4-85720.0.r348042/1152 K 6 gff2ps V 25 dir 4-51813.0.r348876/722 K 4 gmap V 29 dir 4-174086.0.r340725/973746 K 9 gperiodic V 25 dir 2-21330.0.r348877/834 K 6 grappa V 28 dir 4-44738.0.r340718/851597 K 5 hmmer V 28 dir 2-11871.0.r340719/166293 K 5 iolib V 27 dir 4-240487.0.r352216/3053 K 7 jalview V 29 dir 4-155905.0.r340851/211907 K 5 lagan V 29 dir 4-157464.0.r340719/167469 K 6 lamarc V 28 dir 4-45915.0.r340725/975890 K 7 libsbml V 29 dir 4-234730.0.r351411/207481 K 19 linux-foldingathome V 29 dir 4-171590.0.r340851/212911 K 5 mafft V 27 dir 4-157209.0.r348042/1845 K 5 mapm3 V 29 dir 4-210625.0.r340725/987137 K 7 migrate V 26 dir 4-45878.0.r341721/1374 K 6 molden V 28 dir 2-18587.0.r347809/171426 K 5 mopac V 25 dir 2-18535.0.r348878/984 K 7 mrbayes V 29 dir 4-203737.0.r340725/991850 K 6 mummer V 27 dir 4-203638.0.r348042/3272 K 6 muscle V 27 dir 4-213031.0.r348042/3961 K 12 ncbi-toolkit V 26 dir 4-34402.0.r348888/1648 K 6 njplot V 27 dir 4-213034.0.r345397/4628 K 6 ortep3 V 28 dir 2-18887.0.r347809/172119 K 10 p5-AcePerl V 26 dir 4-31083.0.r343590/1743 K 22 p5-Bio-ASN1-EntrezGene V 29 dir 4-145476.0.r340718/863799 K 10 p5-Bio-Das V 29 dir 4-141702.0.r340718/864522 K 15 p5-Bio-Das-Lite V 26 dir 4-250445.0.r341804/958 K 11 p5-Bio-GFF3 V 27 dir 4-273031.0.r349256/1014 K 12 p5-Bio-Glite V 29 dir 4-231492.0.r340718/866661 K 15 p5-Bio-Graphics V 27 dir 4-229849.0.r350675/2657 K 14 p5-Bio-MAGETAB V 29 dir 4-236853.0.r340718/868098 K 12 p5-Bio-NEXUS V 27 dir 4-240135.0.r341989/7474 K 12 p5-Bio-Phylo V 29 dir 4-162248.0.r340718/869527 K 10 p5-Bio-SCF V 29 dir 4-240489.0.r340717/825261 K 10 p5-bioperl V 26 dir 4-31084.0.r350675/3405 K 14 p5-bioperl-run V 27 dir 4-161213.0.r345397/6078 K 4 paml V 26 dir 2-30407.0.r350214/1644 K 9 phd2fasta V 29 dir 4-213592.0.r340725/999782 K 5 phrap V 30 dir 4-213596.0.r340725/1000761 K 5 phred V 30 dir g-213596.0.r340725/1001739 K 6 phylip V 28 dir 2-30408.0.r351411/208175 K 5 phyml V 26 dir 4-238140.0.r341987/458 K 6 platon V 28 dir 2-18586.0.r347809/172863 K 5 plink V 29 dir 4-304954.0.r347809/173554 K 8 plinkseq V 26 dir g-304954.0.r347367/605 K 7 povchem V 29 dir 2-10173.0.r340725/1002739 K 7 primer3 V 26 dir 4-66513.0.r350288/1076 K 8 protomol V 29 dir 4-161442.0.r351411/208926 K 5 psi88 V 28 dir 2-18534.0.r347809/174245 K 12 py-biopython V 28 dir 4-31163.0.r347809/174948 K 8 pycogent V 29 dir 4-236469.0.r347809/175659 K 7 pyfasta V 26 dir 4-244412.0.r350289/990 K 5 pymol V 28 dir 4-64463.0.r351411/209673 K 12 python-nexus V 26 dir 4-246859.0.r341983/569 K 9 recombine V 25 dir 4-45886.0.r344537/882 K 8 ruby-bio V 26 dir 4-49156.0.r350461/1298 K 7 seaview V 25 dir 2-9150.0.r346262/1297 K 5 seqan V 29 dir 4-298619.0.r347809/177065 K 5 seqio V 25 dir 4-46640.0.r344538/974 K 8 seqtools V 27 dir 5-333374.0.r343923/3489 K 4 sim4 V 25 dir 4-31064.0.r344539/881 K 5 ssaha V 26 dir 4-215429.0.r347560/501 K 11 tRNAscan-SE V 26 dir 4-56741.0.r342905/1127 K 8 t_coffee V 28 dir 4-53719.0.r347809/177756 K 6 tinker V 26 dir 2-14597.0.r351875/3445 K 10 treepuzzle V 28 dir 4-70552.0.r340722/508134 K 9 treeviewx V 25 dir 4-46356.0.r349380/513 K 5 ugene V 27 dir 4-312798.0.r347340/1982 K 6 velvet V 27 dir 4-243919.0.r348042/6751 K 4 wise V 25 dir 4-66053.0.r348933/970 K 6 xmolwt V 25 dir 2-21329.0.r348935/730 END ENDREP id: 1-9066.0.r352216/7448 type: dir pred: 1-9066.0.r351875/7841 count: 1658 text: 352216 3229 4206 0 543b6daa3901edfb497c6baefb228261 cpath: /head/biology copyroot: 0 / PLAIN K 10 .gitignore V 26 file 1-348322.0.r348482/68 K 7 CHANGES V 28 file 1-99373.0.r351936/45845 K 15 CONTRIBUTING.md V 27 file 1-348323.0.r348323/344 K 9 COPYRIGHT V 25 file 1-146787.0.r345912/0 K 4 GIDs V 27 file 1-168311.0.r351030/157 K 8 Keywords V 27 dir 1-314142.0.r351064/5501 K 5 LEGAL V 25 file 1-748.0.r350942/2586 K 5 MOVED V 26 file 1-69878.0.r352072/265 K 8 Makefile V 22 file 1-6.0.r335781/123 K 2 Mk V 22 dir 1-5.0.r352075/3863 K 6 README V 25 file 1-2408.0.r340854/960 K 9 Templates V 24 dir 1-2932.0.r349240/801 K 5 Tools V 26 dir 3-15302.0.r351791/3267 K 4 UIDs V 27 file 4-168311.0.r351030/437 K 8 UPDATING V 28 file 1-102685.0.r351661/1343 K 13 accessibility V 28 dir 1-42583.0.r351411/112794 K 6 arabic V 27 dir 1-38973.0.r349983/91890 K 9 archivers V 25 dir 1-242.0.r352062/12636 K 5 astro V 24 dir 1-301.0.r352019/7229 K 5 audio V 25 dir 1-148.0.r352177/45022 K 10 benchmarks V 25 dir 1-62.0.r351936/135052 K 7 biology V 25 dir 1-9066.0.r352216/7448 K 3 cad V 24 dir 1-276.0.r352017/6282 K 7 chinese V 25 dir 1-3770.0.r352020/7729 K 5 comms V 23 dir 1-76.0.r352139/9561 K 10 converters V 27 dir 1-1561.0.r351936/155635 K 9 databases V 25 dir 1-771.0.r352114/50736 K 9 deskutils V 26 dir 1-2098.0.r352099/15650 K 5 devel V 25 dir 1-73.0.r352215/253573 K 3 dns V 25 dir 1-6145.0.r352155/9826 K 7 editors V 23 dir 4-6.0.r352144/15538 K 9 emulators V 25 dir 1-181.0.r352137/16368 K 7 finance V 27 dir 1-4110.0.r351411/715464 K 6 french V 28 dir 1-25673.0.r351936/533707 K 3 ftp V 24 dir 1-199.0.r352026/6604 K 5 games V 25 dir 1-104.0.r352213/59402 K 6 german V 25 dir 1-7451.0.r351465/3390 K 8 graphics V 24 dir 1-94.0.r352210/54885 K 6 hebrew V 26 dir 3-31142.0.r350599/1461 K 9 hungarian V 29 dir 1p-38973.0.r349983/681761 K 3 irc V 23 dir 1-42.0.r352207/9825 K 8 japanese V 25 dir 1-410.0.r352046/17473 K 4 java V 26 dir 1-2798.0.r352108/10179 K 6 korean V 27 dir 1-5873.0.r352016/350302 K 4 lang V 24 dir 1-15.0.r352070/26520 K 4 mail V 24 dir 1-57.0.r352112/40606 K 4 math V 25 dir 1-162.0.r352108/46161 K 4 misc V 24 dir 7-35.0.r352095/25574 K 10 multimedia V 25 dir d-333.0.r352153/21836 K 3 net V 24 dir 1-22.0.r352164/67227 K 6 net-im V 28 dir 15-11144.0.r352078/12717 K 8 net-mgmt V 26 dir r-1011.0.r352214/21536 K 7 net-p2p V 26 dir g-29106.0.r352209/7506 K 4 news V 26 dir 1-145.0.r351663/158606 K 4 palm V 25 dir 1-6646.0.r350937/2001 K 6 polish V 27 dir tv-38973.0.r350442/2253 K 10 ports-mgmt V 25 dir 1-5132.0.r352174/4934 K 10 portuguese V 26 dir 1-17842.0.r350036/2182 K 5 print V 24 dir 1-79.0.r352168/17846 K 7 russian V 25 dir 1-1559.0.r351917/7320 K 7 science V 26 dir n-5356.0.r352069/13690 K 8 security V 25 dir 1-269.0.r352208/54228 K 6 shells V 22 dir w-6.0.r351864/3123 K 8 sysutils V 25 dir b-339.0.r352206/54217 K 8 textproc V 25 dir 1-322.0.r352193/84879 K 9 ukrainian V 29 dir g-39704.0.r349983/1181897 K 10 vietnamese V 25 dir 1-4812.0.r350247/1919 K 3 www V 26 dir 1-114.0.r352212/129819 K 3 x11 V 24 dir 1-16.0.r352205/25454 K 10 x11-clocks V 27 dir 1-931.0.r351411/1949647 K 11 x11-drivers V 30 dir 1-157567.0.r351936/1459537 K 6 x11-fm V 24 dir 1-691.0.r352090/3253 K 9 x11-fonts V 25 dir 1-543.0.r352136/10218 K 11 x11-servers V 25 dir 1n-710.0.r351995/4436 K 10 x11-themes V 27 dir 1-14410.0.r352202/10682 K 12 x11-toolkits V 25 dir 1-120.0.r352211/16991 K 6 x11-wm V 23 dir 1-40.0.r352018/9988 END ENDREP id: 2-1.0.r352216/10985 type: dir pred: 2-1.0.r352215/257111 count: 351292 text: 352216 7618 3354 0 43228c28145a70d587e9e69f9750f7b9 props: 308235 235189 45 0 7a04b33bf8e35fd5c3d111baaf403dc5 cpath: /head copyroot: 0 / PLAIN K 8 branches V 24 dir 0-1.0.r352203/257989 K 4 head V 23 dir 2-1.0.r352216/10985 K 8 svnadmin V 22 dir 3-1.0.r352143/1246 K 4 tags V 22 dir 8-1.0.r336829/4760 END ENDREP id: 0.0.r352216/11381 type: dir pred: 0.0.r352215/257510 count: 352216 text: 352216 11205 163 0 ecce6cff8cf7bda4b02d1b26d98f4714 props: 341041 7140 346 0 8b695b9f61597e4917effffba3bbfaa3 cpath: / copyroot: 0 / minfo-cnt: 11 5-240487.0.t352215-7js1 modify-file true false /head/biology/iolib/Makefile 8-240487.0.t352215-7js1 modify-file true false /head/biology/iolib/distinfo _6.0.t352215-7js1 add-file true true /head/biology/iolib/files/patch-progs__scram_flgstat.c c-240487.0.t352215-7js1 modify-file true false /head/biology/iolib/pkg-plist 11381 11606