DELTA 374729 0 29 SVN*  ?d/amtoolsENDREP DELTA SVNQ<QQx^e]k0_!Rߍ8J]&ˊ+/$'\d !}R/0}X=Gi/3=>@&Ym[w, OVJ&qDb]ZMSv0N6`$1Jmll#Pa QP؆g_M .CEZ繬etSNd[Yڧ\Dr+[sϋ״$&2אַy0ORv^jKly6s06:uԝP}y%J9}>dץGbsj#AE+L߽%]$!mА jўÜÃ܁s7ۜ:#k!}i D4hfomW  Cx}|_,8 1gn"Bڹ}1:!gƍ*C Sc6qԞ8~g#vmkKKp"P#JC`:XTJ-BX1-Ec0Je%,üVu3/L:?e_QA̼ʋ\xSc.ɻi/PM`Jwx - [jL`tn[ 򣵤t_U.jPj9ذq#F+e~fAG]ȼӒM.5vm#ʡvF$' [fK^aaZ;m4yʘm4h( x*+7J0j|?'$.Krm}%}`wAȅ')y IArk\L( ^<4hᇧw}S?K h\Bh՞b5kƆ0ȟ%>4 `>ͅTM2td^x|ns(Ytn;M=_a(EK5:>*jʉvY5V + +#include +#ifdef __FreeBSD__ +# if __FreeBSD_version < 1000034 +# define logl(x) log(x) +# define expl(x) exp(x) +# endif +#endif + #include "errmod.h" #include "htslib/ksort.h" KSORT_INIT_GENERIC(uint16_t) ENDREP DELTA SVNKLKK Add %%PREFIX%%/bin/samtools_misc to your path to use miscellaneous tools. ENDREP DELTA SVNhjhhSamtools implements various utilities for post-processing alignments in the SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction with bcftools), and a simple alignment viewer. 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