DELTA 414646 0 1729 SVNS CQl:Q10: AFFECTS: Users of biology/seqan AUTHOR: junovitch@FreeBSD.org The biology/seqan port has been split into biology/seqan (only the library) and biology/seqan-apps for the programs based on SeqAn. Both ports are based on version 2.1.1 of the SeqAn repository. There is a new biology/seqan1 port with version 1.3 of SeqAn for backwards compatibility, but this port will likely be deprecated in the next year so please update your software to SeqAn2 \Z&Zity/calife-devel or # pkg_delete security/calife-devel and install security/calife. Change origin if you had the old one: # pkg set -o security/calife-devel:security/calife 20140527: AFFECTS: users of databases/db6 AUTHOR: mandree@FreeBSD.org Oracle BerkeleyDB 6.0 was upgraded to version 6.0.30. Databases that use BLOBs need to be upgraded using db_upgrade-6.0 before they can be accessed again. See the manual for details: Transmission has been updated to 2.12. The following name of binaries and manpages have been renamed: transmissioncli -> transmission-cli transmission -> transmission-gtk 20101117: AFFECTS: users of devel/ccache AUTHOR: Emanuel Haupt Updated instructions on how to workaround a buildworld failure have been committed. Please (re)read the following document after updating ccache to 3.1.1_1:U/ \ZUZ AFFECTS: users of www/squid AUTHOR: Thomas-Martin Seck www/squid has been updated to Squid 2.7.STABLE3. The update should be rather straightforward. The only noticeable change in the port is that the ICAP patch is no longer included; this is because this patch was unmaintained for a long time and its use was not really recommended. Please consider moving to Squid-3 (currently available as www/squid30) if you need ICAP support. SquENDREP DELTA 414897 0 30 SVN+  'an1ENDREP DELTA 381791 0 26 SVN %;/z/x^Q]o0} ?DtO4 NgviBDZk¢V>l]sν7Y r0JkmʦjG<.K9#vq+rգ\saW妓C@Nع.}$$hXCQM.t[("p->G\=T)ղ:R#m%{I >ѿ[?8`銆gc=gNv M6xdz-8IohQi0a 8-ow߮0xZAs/pߵh{YU)2+e5EFWu/ѫ]^]N%}@ـf'.;2̒.:U8XY^ʠ~"!)12 e5F6;7i ;~t!ENDREP DELTA 298619 699 138 SVN}library-2.1.1.tar.xz) = 8926f91fec5ce57e8efc70ac16cbf041bde0e0be463685b86e0d2e1e6a8169d7 SIZE (seqan-library-2.1.1.tar.xz) = 5238884 ENDREP DELTA 298619 1993 283 SVN h \ p[m[This port now only contains the header library and API documentation. The apps are separateENDREP DELTA 371237 1515 20 SVN-+'f-F?{\\tl8TL9jj/KMg70Nk0GySGEn kw)iTEP{?.P C|Xb" cv5.u!_uuujZ f}hzk=lwnabm_f|nkqC=K88jx^}[w8;qeYv#jIϚ.$ļ m+Tn)@wgmYY­P%0"~.OXҳo`$XHb+"J^2+N-%[ViX,mY/X' X Qd^R%l|R$y-`i}5qliW5B&eOH@Ċ,-k-̊IJ7r'nO){+ ;ȜބVu'١I"]f"y-ES *ᆲGbآ5D{fqJlv`}44\w*9MU 'kS|rg3YQdu]قŻPw٦Z2\/x+,B]2础??XDf^  KZ{cVI#ܔ:Cy^a.H<}׭a ^"z΢((3Kaݹ]!/Xt5}m3t^`W{g!WyYs +!YvG,<*tB,~YȮ>A zƼ`6;ztܕ2 dYa'eAAvjzR 8,Q-RB FX;BtΑhXA-o\b6,E]g1ǁDog[$Or Gz|j<[Rm;;zBבLҲ>n &Ϥ1[9Vh/+hE} /X>i9Pp)9zKЀNK-` SX9&Qዢ!95R_g0ƒ/KI+xP \(D ȱ[ O0>8RQ-euD sWX` M3ew͡ct9I f2[x{b]Op W`na|M b+8{37X&1pJSY5^} 2GKD%cm̈́2V 2a)+;MUy#1 d +jM[-ewN,[n2;f1K[-ƬVy:cBwn:Ռ e Ǹ]4ɶ1s6:pm*6@;h^SڑP5-F,wď';26V53VqtYO0ҧOyp /.Uhw-)Ȭ*pܭ@dW ){/YLLiNF<LVrSKCjj - O{׎o}x5:M k̰ff Gy:)X9xg"[֝Ί5nt p/9W5oLhЛƸ&s(h:N+7nC3Acx*N"eF0ZPmӽ'ushtdor.3#TT"ȆёOj ln_MĨzWDdN^} t J7iG>\n;S-*NV>(*wJ PJӺ`- RKHE"~ wa 7,\m v3)i_C#\F>0=r>w.ٍf,kV)a!,ގvZ=aն̭(dٺP )T=YO' QZ. C.>3Kf_쨌:T0SR{sڿ $p'Z,K1kucP! K4 ]{↻ zbf>>bda0؃%uA_з(2nEGJ6 du%j&Ry$УY^IYY{9V"&/4`PRpm~),; E;R8h_"\87ak݈Cjv$mfrgsU0ãO(W~;կhKjj{ejDMηK2㤢žTc3BcU2#MHhj:Z̞x*~utZYe>#OYֿuՄ/0-]#BAm0xU9'ػFYW M:fq qc׺]Qi~ _S=~=E0>ǿ5xÿu>2z3ߜ씚ގ'_ݤb]&y30w9++J=FRHU'7ht6n]MzOڅq7 qmԴIW.=h'9gBȭ Gۈ@'mar8d*R9 پVC~qcl@zdxd+yNb= V ] 6,ҥu\b8v ȵ^7pY9ٟ ص5FZt̵<\q>6;tJsg=}׃xkXQgk1p [7RXyS(@?΢=NU{q|KՓ9ʠzb9wk5w c=ܖ%K#_*.% 8qWӡNUb^'ڕaSV;wjl5nCw4kL2nkP_drGt^kEMa%T+eno:֧=¾@*-Hh<qxBYJQ*o'Eз 3N>3kKba(%Xv9X:?(M\9=^TˋE Iա+9fˏp/oOYf@P+/lk@gpiwxʞ$(\>c UړV\Fm4Gsu뵇I:먎)i âw.ѠoOXfab:)blm ěǍ^ڡivX(r:쒽l^ұ2xΙ8WiKuXѩ|Y wm~wC~&>"NMӘzX'kyutPɘp-Ne&Uro7ƛEqˣK^yL$rov%a_ mN9*^lGN |'9t0 _Cdi!NЎ*`Ng᠘ I4v{iMlaj[ l*V/tJ6 NT#U0@ [D.C)Cg$<) Ӏ)}ȁL[q븺C={CŊy|*SoJs:Î'}Uo% D`;ߑF:b/Eʅ2;%zwK|:Ă0a9I1"3}A; YYfɷJ%=?<] 46TX*eN r#)}\u{M+p3 n%6zPOW`'=7.ՄICR*a䆐TI!7KcH`w< $(UT`:@.wdT(Ȝ>ocG^3\(O$(ƎӱuƇI_ Ude!UU1vz8+rÜR!8 Q U&t8Ez%?*qѮ*J,E( Q wF;"3ó Ni(0pB-+P]0:X0X9p4_,V0?~*»7Ymj*.U4,U,kÉ.t]rQ K>/9aJŃ 3b=b}9c+G }{gn׍WъZz 8 !G ,kg*ۧ^1؆4I !,< 05[O#;<˷{~j1)P<c -ZMUX Clf4l h,bPm2^tJsM6[PftV"0 #гB*O3nxz'r%X H`xghuFm<Ҍ$>@/#q-7Qߧ\NjϦᓐe$m1lOCxD\%a1xYںX|0hb\G|&*Y]Ξ[P2[0טhw/P#Cmß6`fPѼ9fuڤ{7bu[Y6 e#%9)K'$3Zdx2Nk4 7q61б ߖ?}>ffgbB%v2*mHI0Lcaa~3&RVwיWgrIN#J#*XUYE1:pY="bֱ8$sYye@##;"LuuXdԭ@ h"\S)emxlew~O.Np1̳x4ȧr۩=G> uX{_ۛ/` %epk3T'Co{r }k=MZx]2!t'Yec);mgN O}ޅϫz>{5L"Q5CMG}YH N}1w(oOOꇾQ8nԥ!8X`wL}eB}.xxZxGiRe9XQ) ,XC"ij4=EVvGkTvu١i-xY t:HP&ʱ^ܑ 푎ƍGJݱr]Y!md6^ѰK]lQţHkZg yd-XC'DsTpRb\rZJ! h6iWd5WD]^׋g4qo#vywP.pwRXt%TԈնsrZdd.fCu\.ۡa'/IQ=N$suINcPq}xBlGD cVK'ZAs|)A$70Rc-F:#e,ill9mG+N(Rvrl"$p YQHLkz#۝͚sp`ʃ9@j=p\u Rh)Pé\*F]*)syUC_n7T~@RaauD@1#mdcc&ko XU_W{1/*HV0YLʳ<]#A .{ݰ,x Sz}\`*w2^,6davk5 //>gR OøA|l}PS B)|<{g m݆r/)>e)/mNwL,7)ݚK\7 g<;ڋdo^h-cnnӀ-9>+fSVŵmt:uu_7W`ui񠮳bJmMsK6nȆ0:ڜFV-uYzZ{2K2_՘~ w@5:EVQZ ,Jp~:5ls\j>dMbtUA˳bf`r!\{YP3=$ʄ@"YykFG#VϺyUr3qz#P&-ZxӛnS'#vÅZ/JG󏃕%A͖nqJmyЈ@}|-ތ],o}SdٳsѳggRoքf1ƚknqzMNV"\WE9z E G҄R0Wւ(yFߖ? _<C5uqq~3Ab$,oE~"Dⅷb/st!R&Zg.|)>}Ԣﳋs<)M6Y..VA$ #w D~O_?4x\_@E[ >~XƬ >ޫxۮNfKT jry5>s \_6ԿHƟ~V"yxu/PϿ^yKkn;_~[oQ[o>^ ;oY̿eto7-.REb20sѱיKMJ)b;XM@;zIX.<ŮV'֭*Th0/fP(<0+03 bX=ʮX0JCC+%>B.7i ЪOTXV|U*(/ESUj ‹:e d}E4UB> ` "B29|Y%nK{7pJ;eܓ{E$ +SOK3J$!v_BYo,R&J;JΩ7++ ӑt)^넟t^,6^mvUl203#?vhb>1E*%W٩=mLaWW~EOa[eoa_;Zo_ѫ]?ԁ@B44fz vZ|e'"I=O|*R̠STb0FŲx=j_ >_YB1_t1}ʽf :y}~T0^ZS-Zx{|&4jmB563qŧ-Ċg: υY4YYx^XKs0Wµ!`^^NdIe]Iif]1>ɤSt2d<ǭLMa1!P ^MhFgFG%Hрm8!#0ZFo6gc%A.wF=:ĸQ{ ##X lHaO]I'+`i`MP*a(rit ½=ipǙCvA u9A_R}1VIzV8^} .qFËN!ZR&%ohNͶ@G#ˆ<']nwf`E[4W@Dx$8t3Cl%>6K$ieOgĮ"obHb:MSBY =.t <UM.PCǘSOu}9$̋둳 ۜg"cf<;3S+]"@.XDJw۔{'E"U./XX5prmuh] &ӞI`O-1sk1 E\tH6@^8.aƉzY;^zY/I>Kɶ,G(?6"[3\|U7P*>6`_YtROu%Y =)iUxч=8|R,kӑt\[=77s=w1q2<K<6 6zmZոn^Fax-vUe"UZuX5is|ʸdM{EK+Yr\&@jL$M[b¦V+MӲ̳N۲:<ϓ, XyèTP[gm4+]D~YrU\ײ Tܼ}N>gL{rV+!Gj0w*kr}K?_qZ¶SjM 5vFC׶st!!Rkr_&7,33rHGfKmЭquYr[יEnpf ngZk}cy&'Fmg]![c U3]ĕ KeG5SŢ^^a,퟇y4B=$_u{5 ]{G'ttWH- 3+\-KQ֦%h/Yb6ʴ.1mp5y :s3Tgs {E:7^{%[?~fT6wq=A.e'1oA ܠlVߕeߴf@:99lZ;!h#dQ؏g2vc\:}vvMY |p.)6 re0_ n8)\$p9JW6 u鲶k "PХXd:, s i[' "f'' gT`펹13¶;;zz0!j|.v6(wn#ѷKTihOfG?ag_2p|!bb;YGSY%ɩ'ڛZ'Z=U+uFKz",y-AMGFnF*%V3"vPDz.m6Zc,#5Ȃ`].Q#]h4-L;F6D袡>͞uO"aZ½|x䇻gb$tcν0YN LyNUm{lt{C1#nҴSS%W]c6T]ro _/Noɽz_c[@RB m8^Քxc4&)m79B8>"m+d ' A- Ә҈y_ӈ[fT+$fykZ9=5sSlW^z4%3-@sM1)Lz%MeP%, ;0bauX|YC3T9ܿZ;Fy}.8,5H <sT$H74?5%4m(zfIPscNFS1A4Gc4 zCPrjaF+RjDs%Ekj %?\N;SLWBfjAo,;9>@/瀎 Y?'R(s~IХ.CKuY]句39ߙu*ղ zc1Rv@; "u7Q홖>F?gVWuJ@$][.PnI'G3@?9.UN+r;N5إZ=d'u)N 1U鹛 $hl,_tI~Uƒlce27++w t7T5Kh}in{'&k<Ñk st݊Y7d= &9zaٟ ^NGNe*D h;,w&024V:]Ҟ83&,'b\'3zMuVW.fbH[u pYcC:``^)\0耹C|%#PWXrvLNBM29t-{ٔ^%#*jY+,j%vX0?]0ntJh2 n^C ?<'xjA)9wD|,"i4@4X ^5&NYO>V/!Nl6.Kte 'z$U6CDT8 m2} Lz$<9sOLyrobz IorN|3#cܱJ,+-4wFG0s tAE@%縇a;.s .9N!]+'>;5{,|]-\,̆<` ګ'uٲHJB,y֨<65VC >/& b.nKbbinN̢̠q _bφqKѶґX+wK=ynfx$ā|VcȨ'C9U&<a9sۢ8?N=u&DwT9{/j3[3OUNXI k9&O:RUrY99 &ru@Hj"1= $PS&<ә?rHU0=W]^wkDm#tmrFazHB}׺lu[LPHQfڧUgN2=:3GNByr|x*l#O %= #rwJdAw' ]cDj6_iC$|Z6G8C$&f#x R3 OQV|X7Y}x]Yw qk$L,=fA󪸉^/*ٌLsCԶm&bVǬN[I}zRp-m|A]Z4YOx&XGOH[ s5Ѵk"QOhZy+.p[45XS)L6z]q/kCWE m?Mm{57I ;ZpS&NHn'$omy⢠\@tA٩Y9ܪm6>`s^s4scԣA <_zJງ-rסweSC%!!kIF6[gOI~GGоk'f^6>&YBo>jؙo@c|# X%uag'z)8~N"i921x/'8x2 f&|Kr7m#%5E"@"BM)jw7űTӸc 4N8!23B_` RX|P cfc4;9c6[royy= g wkߓH7 'ϏXquigАF2oL g [Լd;w KTS;OmVJQr7d_FrnG~ݫ,/S.2u] p xa@t~~s|N. RvEr&H+I鴐R\ ~mR/hLĮYCp pr9""r "~D|y3>į[Jկo4+DծS4t4v)~Ga]^.le:|Kշq[_i^ҭcw'FY^E2桃H(j0]2_5~!a? ^onb\,syZ5 `X'].[@]x*x±^F}>:;?aqћ_ѕrd&5+l z V etsf̟ABw $E 0cǍ+'0g ,}t>%QMԇ,vј!gj{Vm6 =wMtqGkbM! qXhw'I#/2JI#Isf_F6}64Y_|;OmVlvŐ1yPM:+y,o"Q#uhֽ-@Xu;(NJCharwr cvB~$4$B\r;R_&v%ON®bk v협>nE{WX1#74?&V3dnGd2NhV౜[IOPUS)w`5G@Z~#А=v kcw) deYi.C՗lUIs_#>I˿%[d{KB̖їf?fkPOq ބK>"'=~BOL+43$mM^tJيUWe6r폞 va;ޟRM-BGe?^m3I>=I)LrdGX ;y{Zj_oVWHV}nˆqGwwG7IPAtS=kgkaҒo=FVɷC\nDO?TKQjICYErv\3s3$ I@2aLS+Sa bo?> D޼ɼD%H%$P/i"Z齷vAio*U⳹ͣzY&t胣Ώm2ם/i u3S}/0UsZEu#83JA2|x0eTe,Ky9YX{ k@/V"xpҷ.nzb#f@Zu{GB2nYo'B+%qe[QXn{GC(o_G8@ voa.2oA2=zܻHeIu_b9FJco>Yob_5\DWtr_;%cNs B&/yY[tY~/mzEH/ݚ?T3;55%߲j" zY$8۞zS䯤 Fjts8aDT;gpڹ:RV:㛊A|\)}">Kh1lըx؁1bҡuL&Xy 7"fX7PNn&9-=Oz.:HEun->͟@bb!^Z-3QS X"!~^):;u2䵶>,7aGY `%ݭ z+Rċبs2Xc}b4 SQ 2\5H\tEŒB|-dA')Qbé\fW5Q:qPb˧ƚQ6 첻=Sw<ƶY5G9Xl„#r0XS:8mrReN%>fNWueFn4$F6w #h ql\k-r C~ {CCV+ >Q \IRbˎ=o}? z>R?~j;y$?e4w(J+;Y g65ԝ`Ud2.벍fUP'T[3N2";+U]|l-ߋzN#)%9!粃}^o92Yy@4]4 w 3 ȹUI$)S~l1GoMrx_ӓӳHAT`4Z0`˕yXBxIt=_\CN:K&zˆLpY`3NY1y(ga{^Jg(b6I~Kmt^2Z2^N ;ڟҪ"HU,$wۯ >7|p׵_\LcAş4Nçg']W1YX׈K2ZT! q͸lrJDe/rGDbhPiK]([I٢˟lz h).KT+%?=<_B~6ejOR"ًG(HQISTZ>fZrI%TwSZn3UmVUIc@d 0'IKrq!+M{`~~o w+C+`UHzDh^55̏Dpŵ5YBQ5BB7vP[ɊO*k=겔ָ)2j}4:7*,?&7$w9Jڀ^HJƇ^UWdENDREP id: 1-102685.0.r414898/25911 type: file pred: 1-102685.0.r414646/5023 count: 1925 text: 414898 0 2483 440495 314ce3f032b59dbac19639264ec757c1 e5694fd358289c5710dc248b5e6bce9d577c067e 414897-8w4y/_2 props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/UPDATING copyroot: 0 / id: 3-9066.0.r414898/26202 type: file pred: 3-9066.0.r414897/2524 count: 158 text: 414898 2510 26 2475 ae4591a11e88419a89e877b22e71f32c ca3f5bb8cfb5ba0c9cb8c5bb1664cb08053a2bf9 414897-8w4y/_4 props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/Makefile copyroot: 0 / id: 5-298619.0.r414898/26495 type: file pred: 5-298619.0.r381791/53 count: 15 text: 414898 2561 442 771 d5eb4b782236679e7641d94001ae2eed 9a58323fec4466541c7e071593f2ee711811a832 414897-8w4y/_6 props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/seqan/Makefile copyroot: 0 / id: 8-298619.0.r414898/26795 type: file pred: 8-298619.0.r340717/838166 count: 3 text: 414898 3028 152 147 1d5171057a2f17365d376d1b79ec12a6 638fb6654a7cc9f756f5cb1962ce585b5d37ff1d 414897-8w4y/_7 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/seqan/distinfo copyroot: 0 / id: i-298619.0.r414898/27099 type: file pred: i-298619.0.r340718/884793 count: 3 text: 414898 3208 113 360 5a3474583d3277dea7ddde15b053d5c8 1f3073fcc673db01c2aa4e3d3803ec15caea8564 414897-8w4y/_8 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/seqan/pkg-descr copyroot: 0 / id: k-298619.0.r414898/27404 type: file pred: k-298619.0.r371237/25260 count: 4 text: 414898 3350 12545 108121 4ae4361ae89b4b57aba3865d8169488d 3e47a7a45e6e926c6ca5af422b01c95a08bdf00a 414897-8w4y/_9 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/seqan/pkg-plist copyroot: 0 / PLAIN K 8 Makefile V 29 file 5-298619.0.r414898/26495 K 8 distinfo V 29 file 8-298619.0.r414898/26795 K 9 pkg-descr V 29 file i-298619.0.r414898/27099 K 9 pkg-plist V 29 file k-298619.0.r414898/27404 END ENDREP id: 4-298619.0.r414898/27924 type: dir pred: 4-298619.0.r381791/604 count: 21 text: 414898 27713 198 0 f04058173a6f6d12a5d87769a7a511c9 cpath: /head/biology/seqan copyroot: 0 / id: 5-298619.0-414898.r414898/28102 type: file pred: 5-298619.0.r381791/53 count: 15 text: 414898 15923 331 708 8d41aaa76fefeee20e21f80def520fe4 c9069d2f833ad1e592af18e8f8fa0b8be2f4e9c4 414897-8w4y/_b props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/seqan1/Makefile copyroot: 414898 /head/biology/seqan1 id: i-298619.0-414898.r414898/28435 type: file pred: i-298619.0.r340718/884793 count: 3 text: 414898 16279 224 372 96e2e9b35df1105310d3cf73bfeb2de8 1bf52b2b6bc3a001425fdb5968ece4eb8900aa13 414897-8w4y/_c props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/seqan1/pkg-descr copyroot: 414898 /head/biology/seqan1 id: k-298619.0-414898.r414898/28773 type: file pred: k-298619.0.r371237/25260 count: 4 text: 414898 16532 9351 98142 9b4c43b9f8c3552728b36d981e8a34f8 abcc1840b6e98716ff54eb8cb552eb9fc7814f66 414897-8w4y/_d props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/seqan1/pkg-plist copyroot: 414898 /head/biology/seqan1 PLAIN K 8 Makefile V 36 file 5-298619.0-414898.r414898/28102 K 8 distinfo V 30 file 8-298619.0.r340717/838166 K 9 pkg-descr V 36 file i-298619.0-414898.r414898/28435 K 9 pkg-plist V 36 file k-298619.0-414898.r414898/28773 END ENDREP id: 4-298619.0-414898.r414898/29346 type: dir pred: 4-298619.0.r381791/604 count: 21 text: 414898 29113 220 0 3e58d88564acdefa49776212beb409dd cpath: /head/biology/seqan1 copyfrom: 414148 /head/biology/seqan PLAIN K 8 Makefile V 27 file 3-9066.0.r414898/26202 K 7 ariadne V 27 dir 4-111985.0.r382111/2681 K 7 artemis V 25 dir 4-51988.0.r380989/618 K 5 avida V 27 dir 4-57919.0.r403676/68546 K 5 babel V 25 dir 2-9147.0.r395828/1878 K 8 bcftools V 29 dir 4-388638.0.r412344/715859 K 8 bedtools V 27 dir 4-406676.0.r406676/4419 K 8 biococoa V 29 dir 4-181036.0.r397315/116345 K 7 biojava V 25 dir 4-33667.0.r356092/818 K 4 blat V 29 dir 4-157190.0.r412344/716551 K 6 bowtie V 27 dir 4-410180.0.r410180/4862 K 7 bowtie2 V 27 dir 4-411698.0.r411698/4203 K 3 bwa V 28 dir 4-397851.0.r403676/69226 K 6 cd-hit V 28 dir 4-397318.0.r403506/49550 K 8 cdbfasta V 28 dir 4-397850.0.r403506/50233 K 6 chemeq V 26 dir 5-153895.0.r412917/669 K 8 clustalw V 28 dir 2-30406.0.r386312/327376 K 6 consed V 29 dir 4-213590.0.r412344/717247 K 4 crux V 29 dir 4-235460.0.r412344/717987 K 7 diamond V 27 dir 4-414686.0.r414686/3631 K 6 emboss V 28 dir 4-31178.0.r412344/718721 K 5 fasta V 25 dir 4-38205.0.r395829/914 K 6 fasta3 V 26 dir 4-38207.0.r399468/1087 K 9 fastdnaml V 28 dir 4-33727.0.r405891/192753 K 7 fastool V 28 dir 4-397849.0.r403506/50877 K 8 fasttree V 28 dir 4-397848.0.r403506/51520 K 13 fastx-toolkit V 29 dir 4-397847.0.r412344/719421 K 9 fluctuate V 25 dir 4-45885.0.r401907/565 K 6 garlic V 26 dir 4-85720.0.r371237/6475 K 6 gff2ps V 28 dir 4-51813.0.r412344/720078 K 4 gmap V 28 dir 4-174086.0.r403676/69966 K 9 gperiodic V 25 dir 2-21330.0.r348877/830 K 6 grappa V 25 dir 4-44738.0.r397864/557 K 5 hmmer V 27 dir 2-11871.0.r403506/53701 K 6 htslib V 29 dir 4-374729.0.r412344/720821 K 5 iolib V 27 dir 4-240487.0.r414372/1405 K 7 jalview V 29 dir 4-155905.0.r387021/129494 K 9 jellyfish V 29 dir 4-411785.0.r412344/722298 K 5 lagan V 26 dir 4-157464.0.r405652/548 K 6 lamarc V 27 dir 4-45915.0.r404743/75850 K 13 libgtextutils V 28 dir 4-397846.0.r404743/76546 K 7 libsbml V 27 dir 4-234730.0.r413410/1458 K 19 linux-foldingathome V 27 dir 4-171590.0.r375014/2208 K 5 mafft V 27 dir 4-157209.0.r404405/4435 K 5 mapm3 V 26 dir 4-210625.0.r407778/723 K 7 migrate V 26 dir 4-45878.0.r413499/2085 K 6 molden V 25 dir 2-18587.0.r406795/996 K 5 mopac V 28 dir 2-18535.0.r405891/194090 K 7 mrbayes V 27 dir 4-203737.0.r364996/1442 K 6 mummer V 27 dir 4-203638.0.r393581/1453 K 6 muscle V 28 dir 4-213031.0.r403676/70653 K 11 ncbi-blast+ V 36 dir 4-370220.0-375848.r412344/723807 K 12 ncbi-toolkit V 27 dir 4-34402.0.r371237/12209 K 10 p5-AcePerl V 28 dir 4-31083.0.r412344/724597 K 22 p5-Bio-ASN1-EntrezGene V 29 dir 4-145476.0.r412344/725318 K 10 p5-Bio-Das V 29 dir 4-141702.0.r412344/726045 K 15 p5-Bio-Das-Lite V 29 dir 4-250445.0.r412344/726762 K 11 p5-Bio-GFF3 V 29 dir 4-273031.0.r412344/727480 K 12 p5-Bio-Glite V 29 dir 4-231492.0.r412344/728199 K 15 p5-Bio-Graphics V 29 dir 4-229849.0.r412344/728917 K 14 p5-Bio-MAGETAB V 29 dir 4-236853.0.r412344/729641 K 12 p5-Bio-NEXUS V 29 dir 4-240135.0.r412344/730363 K 12 p5-Bio-Phylo V 29 dir 4-162248.0.r412344/731076 K 10 p5-Bio-SCF V 29 dir 4-240489.0.r412344/731789 K 10 p5-bioperl V 28 dir 4-31084.0.r412344/732533 K 14 p5-bioperl-run V 29 dir 4-161213.0.r412344/733286 K 15 p5-transdecoder V 29 dir 4-411246.0.r412344/734001 K 4 paml V 26 dir 2-30407.0.r383736/1061 K 5 phrap V 27 dir 4-213596.0.r370983/3739 K 5 phred V 28 dir g-213596.0.r365765/23553 K 6 phylip V 28 dir 2-30408.0.r412344/734701 K 5 phyml V 29 dir 4-238140.0.r412344/735349 K 6 platon V 26 dir 2-18586.0.r402567/1117 K 5 plink V 29 dir 4-304954.0.r412344/736042 K 8 plinkseq V 29 dir g-304954.0.r413746/110497 K 7 primer3 V 27 dir 4-66513.0.r354670/62518 K 8 protomol V 29 dir 4-161442.0.r412344/736794 K 5 psi88 V 25 dir 2-18534.0.r413414/613 K 14 py-biom-format V 26 dir 4-414865.0.r414866/511 K 12 py-biopython V 25 dir 4-31163.0.r413489/975 K 8 pycogent V 29 dir 4-236469.0.r412344/738106 K 7 pyfasta V 27 dir 4-244412.0.r371171/8082 K 12 python-nexus V 26 dir 4-246859.0.r408731/972 K 9 recombine V 25 dir 4-45886.0.r344537/879 K 8 ruby-bio V 28 dir 4-49156.0.r412344/738801 K 8 samtools V 29 dir 4-374767.0.r412344/739545 K 7 seaview V 27 dir 2-9150.0.r412344/740184 K 5 seqan V 28 dir 4-298619.0.r414898/27924 K 10 seqan-apps V 27 dir 4-414897.0.r414897/4125 K 6 seqan1 V 35 dir 4-298619.0-414898.r414898/29346 K 5 seqio V 25 dir 4-46640.0.r344538/970 K 8 seqtools V 27 dir 5-333374.0.r413787/1094 K 4 sim4 V 25 dir 4-31064.0.r344539/879 K 7 slclust V 27 dir 4-411697.0.r411697/4040 K 5 ssaha V 27 dir 4-215429.0.r375014/4208 K 11 tRNAscan-SE V 28 dir 4-56741.0.r363374/124834 K 8 t_coffee V 28 dir 4-53719.0.r412344/741570 K 6 tinker V 28 dir 2-14597.0.r394778/180203 K 10 treepuzzle V 28 dir 4-70552.0.r340722/506561 K 9 treeviewx V 28 dir 4-46356.0.r405891/194774 K 11 trimmomatic V 27 dir 4-411261.0.r411261/2756 K 5 ugene V 27 dir 4-312798.0.r414784/3536 K 8 vcftools V 27 dir 4-409624.0.r409624/3011 K 6 velvet V 26 dir 4-243919.0.r377443/787 K 4 wise V 26 dir 4-66053.0.r375014/4880 K 6 xmolwt V 27 dir 2-21329.0.r394780/53141 END ENDREP id: 1-9066.0.r414898/34522 type: dir pred: 1-9066.0.r414897/9188 count: 1969 text: 414898 29555 4954 0 ea2cfda5d7e751d12e0ea10137e0bc6b cpath: /head/biology copyroot: 0 / PLAIN K 10 .arcconfig V 26 file 1-354154.0.r413714/42 K 14 .gitattributes V 27 file 1-411777.0.r411777/210 K 10 .gitignore V 26 file 1-348322.0.r376072/79 K 7 CHANGES V 26 file 1-99373.0.r414163/222 K 15 CONTRIBUTING.md V 27 file 1-348323.0.r348323/344 K 9 COPYRIGHT V 26 file 1-146787.0.r404934/49 K 4 GIDs V 28 file 1-168311.0.r414837/5753 K 8 Keywords V 27 dir 1-314142.0.r399974/1114 K 5 LEGAL V 25 file 1-748.0.r414893/4183 K 5 MOVED V 27 file 1-69878.0.r414893/4461 K 8 Makefile V 22 file 1-6.0.r413203/219 K 2 Mk V 22 dir 1-5.0.r414843/8428 K 6 README V 25 file 1-2408.0.r340854/956 K 9 Templates V 24 dir 1-2932.0.r414724/906 K 5 Tools V 26 dir 3-15302.0.r414399/3029 K 4 UIDs V 28 file 4-168311.0.r414837/6033 K 8 UPDATING V 29 file 1-102685.0.r414898/25911 K 13 accessibility V 27 dir 1-42583.0.r414136/78879 K 6 arabic V 27 dir 1-38973.0.r414753/41113 K 9 archivers V 25 dir 1-242.0.r414861/12819 K 5 astro V 24 dir 1-301.0.r414875/6962 K 5 audio V 25 dir 1-148.0.r414878/43561 K 10 benchmarks V 23 dir 1-62.0.r414538/4599 K 7 biology V 26 dir 1-9066.0.r414898/34522 K 3 cad V 24 dir 1-276.0.r414888/7906 K 7 chinese V 25 dir 1-3770.0.r414867/7732 K 5 comms V 24 dir 1-76.0.r414480/10853 K 10 converters V 26 dir 1-1561.0.r414194/10114 K 9 databases V 25 dir 1-771.0.r414892/56095 K 9 deskutils V 26 dir 1-2098.0.r414893/19566 K 5 devel V 25 dir 1-73.0.r414892/371096 K 3 dns V 26 dir 1-6145.0.r414834/14108 K 7 editors V 23 dir 4-6.0.r414846/16452 K 9 emulators V 24 dir 1-181.0.r414806/9512 K 7 finance V 26 dir 1-4110.0.r414675/12453 K 6 french V 28 dir 1-25673.0.r414753/129805 K 3 ftp V 24 dir 1-199.0.r414606/5593 K 5 games V 25 dir 1-104.0.r414888/68849 K 6 german V 27 dir 1-7451.0.r414753/132234 K 8 graphics V 25 dir 1-94.0.r414892/431215 K 6 hebrew V 28 dir 3-31142.0.r414753/133575 K 9 hungarian V 29 dir 1p-38973.0.r414753/135092 K 3 irc V 23 dir 1-42.0.r414531/9483 K 8 japanese V 26 dir 1-410.0.r414753/151148 K 4 java V 26 dir 1-2798.0.r414893/26043 K 6 korean V 27 dir 1-5873.0.r414753/153985 K 4 lang V 24 dir 1-15.0.r414863/18171 K 4 mail V 24 dir 1-57.0.r414793/43138 K 4 math V 26 dir 1-162.0.r414892/470456 K 4 misc V 25 dir 7-35.0.r414892/496447 K 10 multimedia V 26 dir d-333.0.r414892/522002 K 3 net V 24 dir 1-22.0.r414891/76791 K 6 net-im V 30 dir 15-11144.0.r414136/1418357 K 8 net-mgmt V 26 dir r-1011.0.r414674/20432 K 7 net-p2p V 28 dir g-29106.0.r414892/528378 K 4 news V 24 dir 1-145.0.r414595/4905 K 4 palm V 28 dir 1-6646.0.r412348/2426745 K 6 polish V 29 dir tv-38973.0.r414753/155886 K 10 ports-mgmt V 25 dir 1-5132.0.r414819/4984 K 10 portuguese V 28 dir 1-17842.0.r414753/158434 K 5 print V 24 dir 1-79.0.r414851/15611 K 7 russian V 25 dir 1-1559.0.r414809/3516 K 7 science V 27 dir n-5356.0.r414892/538697 K 8 security V 25 dir 1-269.0.r414896/64489 K 6 shells V 24 dir w-6.0.r414892/602555 K 8 sysutils V 25 dir b-339.0.r414880/62674 K 8 textproc V 25 dir 1-322.0.r414886/93596 K 9 ukrainian V 28 dir g-39704.0.r414753/163106 K 10 vietnamese V 27 dir 1-4812.0.r414753/164907 K 3 www V 26 dir 1-114.0.r414895/139911 K 3 x11 V 25 dir 1-16.0.r414888/155326 K 10 x11-clocks V 24 dir 1-931.0.r414879/6355 K 11 x11-drivers V 30 dir 1-157567.0.r412351/1831680 K 6 x11-fm V 26 dir 1-691.0.r413438/471261 K 9 x11-fonts V 25 dir 1-543.0.r414887/10724 K 11 x11-servers V 28 dir 1n-710.0.r413746/1660837 K 10 x11-themes V 27 dir 1-14410.0.r414476/12660 K 12 x11-toolkits V 26 dir 1-120.0.r414888/171502 K 6 x11-wm V 25 dir 1-40.0.r414892/610299 END ENDREP id: 2-1.0.r414898/38190 type: dir pred: 2-1.0.r414897/12852 count: 411745 text: 414898 34694 3483 0 ae9665e941a031bebcb29d016847f8bd props: 7322 2587 45 0 7a04b33bf8e35fd5c3d111baaf403dc5 cpath: /head copyroot: 0 / PLAIN K 8 branches V 23 dir 0-1.0.r414890/18325 K 4 head V 23 dir 2-1.0.r414898/38190 K 8 projects V 30 dir 0-377393.0.r378744/3577692 K 8 svnadmin V 22 dir 3-1.0.r414872/1661 K 4 tags V 22 dir 8-1.0.r411747/5071 END ENDREP id: 0.0.r414898/38630 type: dir pred: 0.0.r414897/13291 count: 414898 text: 414898 38406 211 0 cb268d4d85f6d797d7aa9d95307bf076 props: 341041 7130 346 0 8b695b9f61597e4917effffba3bbfaa3 cpath: / copyroot: 0 / minfo-cnt: 32 1-102685.0.t414897-8w4y modify-file true false /head/UPDATING 3-9066.0.t414897-8w4y modify-file true false /head/biology/Makefile 5-298619.0.t414897-8w4y modify-file true false /head/biology/seqan/Makefile 8-298619.0.t414897-8w4y modify-file true false /head/biology/seqan/distinfo a-298619.0.r340725/1009115 delete-dir false false /head/biology/seqan/files i-298619.0.t414897-8w4y modify-file true false /head/biology/seqan/pkg-descr k-298619.0.t414897-8w4y modify-file true false /head/biology/seqan/pkg-plist 4-298619._0.t414897-8w4y add-dir false false /head/biology/seqan1 414148 /head/biology/seqan 5-298619._0.t414897-8w4y modify-file true false /head/biology/seqan1/Makefile a-298619.0.r340725/1009115 delete-dir false false /head/biology/seqan1/files i-298619._0.t414897-8w4y modify-file true false /head/biology/seqan1/pkg-descr k-298619._0.t414897-8w4y modify-file true false /head/biology/seqan1/pkg-plist 38630 38854