DELTA 428872 0 32
SVN “+“K

 Š ‰ ‰:‰q	CoordinatENDREP
DELTA
SVN  ƒyƒ{€ƒyƒy# Created by: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
# $FreeBSD$

PORTNAME=	Bio-Coordinate
PORTVERSION=	1.007001
CATEGORIES=	biology perl5
MASTER_SITES=	CPAN
PKGNAMEPREFIX=	p5-

MAINTAINER=	sunpoet@FreeBSD.org
COMMENT=	Modules for working with biological coordinates

LICENSE=	ART10 GPLv1
LICENSE_COMB=	dual
LICENSE_FILE=	${WRKSRC}/LICENSE

BUILD_DEPENDS=	p5-BioPerl>=1.007000:biology/p5-BioPerl
RUN_DEPENDS:=	${BUILD_DEPENDS}

NO_ARCH=	yes
USE_PERL5=	configure
USES=		perl5

.include <bsd.port.mk>
ENDREP
DELTA
SVN  02€00TIMESTAMP = 1482042798
SHA256 (Bio-Coordinate-1.007001.tar.gz) = 63c0a652ec60a2a905d71c85c08b96fcfb12fc784cac8a5d029eb9647d45d619
SIZE (Bio-Coordinate-1.007001.tar.gz) = 44111
ENDREP
DELTA
SVN  SU€SSBio::Coordinate classes are used for working with various biological coordinate
systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples.

WWW: http://search.cpan.org/dist/Bio-Coordinate/
ENDREP
DELTA
SVN  ˆ^M€ˆ^ˆ^x^•ÒA‚0Àñ{ßcWw.ÞJD„±:ËÃ†Ö6tAôé[®HzÏ›àï÷àÏØ±8em5Æø^ž3^¤'"{Ý°?ÿy:€Ô¸2J‰ÎIƒÓìîF°F“º¯AŽèD.´(ÁZA þéUá±u¤í1Ý”#2žƒ¥Ò\‡ß0~ËÙI5õÛ¶ÜUq`I²è!Žúbü÷~Ë ùß<Hc‹Fh~…D?µ0}ãw7+¬ßÚ×³j 4´b„xf¨i¦O ŒaOENDREP
id: 3-9066.0.r428942/1272
type: file
pred: 3-9066.0.r428872/463
count: 163
text: 428942 0 32 2507 20d2874356e3dc815bd38537d714f86f e97df2f1f5d7b9dc008ef7d7e34dc19d40ebe231 428941-96z2/_3
props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5
cpath: /head/biology/Makefile
copyroot: 0 /

id: 5-428942.0.r428942/1560
type: file
count: 0
text: 428942 57 522 505 3f5b30a54f7b6c30846f10c4b2a45d91 1f79881a4fff787d987c0550fabb2c088a63a669 428941-96z2/_7
props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5
cpath: /head/biology/p5-Bio-Coordinate/Makefile
copyroot: 0 /

id: 8-428942.0.r428942/1840
type: file
count: 0
text: 428942 592 193 176 582e142f107bc653f2c07bfb5e2fb993 28e94fc1568fb6a26dd792ef4c0f38f553fc7c3c 428941-96z2/_9
props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce
cpath: /head/biology/p5-Bio-Coordinate/distinfo
copyroot: 0 /

id: a-428942.0.r428942/2122
type: file
count: 0
text: 428942 798 228 211 bb7e2b93dd5e2cad785708193e8a5c15 1522a8dd4c82deb133812c43311f8c960eb80fd1 428941-96z2/_b
props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce
cpath: /head/biology/p5-Bio-Coordinate/pkg-descr
copyroot: 0 /

id: c-428942.0.r428942/2405
type: file
count: 0
text: 428942 1039 220 1118 8885d4611711b5be310f424685f0e0df 744f7445703f6c989f2cad8cd9b899ead77056a0 428941-96z2/_d
props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce
cpath: /head/biology/p5-Bio-Coordinate/pkg-plist
copyroot: 0 /

PLAIN
K 8
Makefile
V 28
file 5-428942.0.r428942/1560
K 8
distinfo
V 28
file 8-428942.0.r428942/1840
K 9
pkg-descr
V 28
file a-428942.0.r428942/2122
K 9
pkg-plist
V 28
file c-428942.0.r428942/2405
END
ENDREP
id: 4-428942.0.r428942/2897
type: dir
count: 0
text: 428942 2690 194 0 be65447cbe499d77c7ba7668bb32340b
cpath: /head/biology/p5-Bio-Coordinate
copyroot: 0 /

PLAIN
K 8
Makefile
V 26
file 3-9066.0.r428942/1272
K 7
ariadne
V 28
dir 4-111985.0.r418840/51789
K 7
artemis
V 28
dir 4-51988.0.r424411/181671
K 5
avida
V 25
dir 4-57919.0.r426378/628
K 5
babel
V 25
dir 2-9147.0.r395828/1878
K 8
bcftools
V 27
dir 4-388638.0.r415914/2371
K 8
bedtools
V 26
dir 4-406676.0.r420587/610
K 8
biococoa
V 29
dir 4-181036.0.r397315/116345
K 7
biojava
V 25
dir 4-33667.0.r424800/663
K 4
blat
V 27
dir 4-157190.0.r428834/1239
K 6
bowtie
V 29
dir 4-410180.0.r426566/115860
K 7
bowtie2
V 27
dir 4-411698.0.r415148/1078
K 3
bwa
V 26
dir 4-397851.0.r425878/675
K 6
cd-hit
V 28
dir 4-397318.0.r427552/77403
K 8
cdbfasta
V 28
dir 4-397850.0.r403506/50233
K 6
chemeq
V 26
dir 5-153895.0.r428829/956
K 8
clustalw
V 27
dir 2-30406.0.r415839/59059
K 6
consed
V 29
dir 4-213590.0.r421387/169413
K 4
crux
V 28
dir 4-235460.0.r428057/34428
K 7
diamond
V 27
dir 4-414686.0.r428850/1078
K 6
emboss
V 27
dir 4-31178.0.r418829/61873
K 5
fasta
V 28
dir 4-38205.0.r424411/182405
K 6
fasta3
V 27
dir 4-38207.0.r415503/88636
K 9
fastdnaml
V 28
dir 4-33727.0.r405891/192753
K 7
fastool
V 28
dir 4-397849.0.r403506/50877
K 8
fasttree
V 29
dir 4-397848.0.r426566/117203
K 13
fastx-toolkit
V 29
dir 4-397847.0.r412344/719421
K 9
fluctuate
V 25
dir 4-45885.0.r401907/565
K 6
garlic
V 26
dir 4-85720.0.r371237/6475
K 6
gff2ps
V 28
dir 4-51813.0.r412344/720078
K 4
gmap
V 28
dir 4-174086.0.r425758/50186
K 9
gperiodic
V 28
dir 2-21330.0.r428152/154803
K 6
grappa
V 28
dir 4-44738.0.r415498/235859
K 5
hmmer
V 27
dir 2-11871.0.r403506/53701
K 6
htslib
V 28
dir 4-374729.0.r424427/99747
K 5
iolib
V 27
dir 4-240487.0.r414372/1405
K 7
jalview
V 29
dir 4-155905.0.r415498/236602
K 9
jellyfish
V 27
dir 4-411785.0.r425879/7262
K 5
lagan
V 28
dir 4-157464.0.r415503/89858
K 6
lamarc
V 26
dir 4-45915.0.r428831/1297
K 13
libgtextutils
V 29
dir 4-397846.0.r424427/101190
K 7
libsbml
V 28
dir 4-234730.0.r425174/63007
K 19
linux-foldingathome
V 29
dir 4-171590.0.r421387/170127
K 5
mafft
V 29
dir 4-157209.0.r415498/237345
K 5
mapm3
V 29
dir 4-210625.0.r415498/238094
K 7
migrate
V 26
dir 4-45878.0.r413499/2085
K 6
molden
V 27
dir 2-18587.0.r428057/35107
K 5
mopac
V 27
dir 2-18535.0.r428057/35790
K 7
mrbayes
V 27
dir 4-203737.0.r364996/1442
K 6
mummer
V 27
dir 4-203638.0.r393581/1453
K 6
muscle
V 27
dir 4-213031.0.r425879/7950
K 11
ncbi-blast+
V 34
dir 4-370220.0-375848.r428903/6192
K 12
ncbi-toolkit
V 27
dir 4-34402.0.r428135/12720
K 6
njplot
V 33
dir 4-213034.0-426241.r427329/674
K 10
p5-AcePerl
V 26
dir 4-31083.0.r425879/8681
K 22
p5-Bio-ASN1-EntrezGene
V 26
dir 4-145476.0.r428869/944
K 17
p5-Bio-Coordinate
V 27
dir 4-428942.0.r428942/2897
K 10
p5-Bio-Das
V 26
dir 4-141702.0.r428870/781
K 15
p5-Bio-Das-Lite
V 29
dir 4-250445.0.r412344/726762
K 11
p5-Bio-GFF3
V 29
dir 4-273031.0.r412344/727480
K 12
p5-Bio-Glite
V 29
dir 4-231492.0.r412344/728199
K 15
p5-Bio-Graphics
V 27
dir 4-229849.0.r428874/1834
K 14
p5-Bio-MAGETAB
V 29
dir 4-236853.0.r412344/729641
K 12
p5-Bio-NEXUS
V 29
dir 4-240135.0.r415498/240218
K 12
p5-Bio-Phylo
V 26
dir 4-162248.0.r428871/700
K 10
p5-Bio-SCF
V 29
dir 4-240489.0.r412344/731789
K 10
p5-BioPerl
V 34
dir 4-31084.0-428868.r428940/16217
K 14
p5-BioPerl-Run
V 34
dir 4-161213.0-428872.r428941/3257
K 15
p5-transdecoder
V 29
dir 4-411246.0.r412344/734001
K 4
paml
V 27
dir 2-30407.0.r425174/64429
K 5
phrap
V 27
dir 4-213596.0.r370983/3739
K 5
phred
V 28
dir g-213596.0.r365765/23553
K 6
phylip
V 28
dir 2-30408.0.r412344/734701
K 5
phyml
V 29
dir 4-238140.0.r412344/735349
K 5
plink
V 28
dir 4-304954.0.r428057/36475
K 8
plinkseq
V 27
dir g-304954.0.r425879/9376
K 7
primer3
V 27
dir 4-66513.0.r354670/62518
K 8
protomol
V 27
dir 4-161442.0.r428835/4404
K 5
psi88
V 27
dir 2-18534.0.r428057/37157
K 14
py-biom-format
V 27
dir 4-414865.0.r422697/2772
K 12
py-biopython
V 26
dir 4-31163.0.r422643/1455
K 8
pycogent
V 27
dir 4-236469.0.r419818/1200
K 7
pyfasta
V 29
dir 4-244412.0.r415498/243704
K 12
python-nexus
V 27
dir 4-246859.0.r416534/1021
K 9
recombine
V 27
dir 4-45886.0.r418767/75989
K 8
ruby-bio
V 28
dir 4-49156.0.r412344/738801
K 8
samtools
V 27
dir 4-374767.0.r415914/5415
K 7
seaview
V 24
dir 2-9150.0.r416671/997
K 5
seqan
V 27
dir 4-298619.0.r422156/2498
K 10
seqan-apps
V 27
dir 4-414897.0.r427129/2176
K 6
seqan1
V 35
dir 4-298619.0-414898.r418767/76744
K 5
seqio
V 25
dir 4-46640.0.r344538/970
K 8
seqtools
V 27
dir 5-333374.0.r425863/2038
K 4
sim4
V 25
dir 4-31064.0.r344539/879
K 7
slclust
V 28
dir 4-411697.0.r416469/51601
K 5
ssaha
V 29
dir 4-215429.0.r426566/118749
K 11
tRNAscan-SE
V 26
dir 4-56741.0.r415128/2758
K 8
t_coffee
V 27
dir 4-53719.0.r428057/37839
K 6
tinker
V 27
dir 2-14597.0.r428057/38572
K 10
treepuzzle
V 28
dir 4-70552.0.r340722/506561
K 9
treeviewx
V 28
dir 4-46356.0.r422140/122961
K 11
trimmomatic
V 27
dir 4-411261.0.r411261/2756
K 5
ugene
V 28
dir 4-312798.0.r425758/50915
K 8
vcftools
V 27
dir 4-409624.0.r427136/3407
K 6
velvet
V 26
dir 4-243919.0.r377443/787
K 4
wise
V 28
dir 4-66053.0.r428152/155489
K 6
xmolwt
V 28
dir 2-21329.0.r428152/156133
END
ENDREP
id: 1-9066.0.r428942/8092
type: dir
pred: 1-9066.0.r428941/8469
count: 2069
text: 428942 3055 5024 0 ac9ba516f06f861fbbcf78ef23a2b6fd
cpath: /head/biology
copyroot: 0 /

PLAIN
K 10
.arcconfig
V 26
file 1-354154.0.r422906/41
K 14
.gitattributes
V 27
file 1-411777.0.r411777/210
K 10
.gitignore
V 26
file 1-348322.0.r376072/79
K 7
CHANGES
V 27
file 1-99373.0.r428889/3033
K 15
CONTRIBUTING.md
V 27
file 1-348323.0.r348323/344
K 9
COPYRIGHT
V 26
file 1-146787.0.r404934/49
K 4
GIDs
V 28
file 1-168311.0.r428883/2657
K 8
Keywords
V 27
dir 1-314142.0.r419368/1305
K 5
LEGAL
V 24
file 1-748.0.r420195/336
K 5
MOVED
V 26
file 1-69878.0.r428875/610
K 8
Makefile
V 24
file 1-6.0.r424411/75633
K 2
Mk
V 22
dir 1-5.0.r428918/2900
K 6
README
V 25
file 1-2408.0.r340854/956
K 9
Templates
V 24
dir 1-2932.0.r414724/906
K 5
Tools
V 26
dir 3-15302.0.r421545/3096
K 4
UIDs
V 28
file 4-168311.0.r428883/2940
K 8
UPDATING
V 28
file 1-102685.0.r428879/1305
K 13
accessibility
V 27
dir 1-42583.0.r428152/46784
K 6
arabic
V 27
dir 1-38973.0.r425933/52485
K 9
archivers
V 25
dir 1-242.0.r428887/13296
K 5
astro
V 24
dir 1-301.0.r428919/7990
K 5
audio
V 25
dir 1-148.0.r428895/47426
K 4
base
V 26
dir 1-420954.0.r425903/598
K 10
benchmarks
V 23
dir 1-62.0.r428828/5977
K 7
biology
V 25
dir 1-9066.0.r428942/8092
K 3
cad
V 25
dir 1-276.0.r428889/63505
K 7
chinese
V 25
dir 1-3770.0.r428775/6783
K 5
comms
V 24
dir 1-76.0.r428773/11797
K 10
converters
V 26
dir 1-1561.0.r428494/93997
K 9
databases
V 25
dir 1-771.0.r428908/54894
K 9
deskutils
V 27
dir 1-2098.0.r428889/133732
K 5
devel
V 25
dir 1-73.0.r428930/311233
K 3
dns
V 26
dir 1-6145.0.r428937/13517
K 7
editors
V 24
dir 4-6.0.r428889/463486
K 9
emulators
V 25
dir 1-181.0.r428906/14712
K 7
finance
V 26
dir 1-4110.0.r428736/11895
K 6
french
V 26
dir 1-25673.0.r428229/2324
K 3
ftp
V 24
dir 1-199.0.r428858/5854
K 5
games
V 25
dir 1-104.0.r428925/58605
K 6
german
V 25
dir 1-7451.0.r428750/2734
K 8
graphics
V 24
dir 1-94.0.r428939/57117
K 6
hebrew
V 28
dir 3-31142.0.r425933/458841
K 9
hungarian
V 29
dir 1p-38973.0.r425933/460362
K 3
irc
V 23
dir 1-42.0.r428833/7319
K 8
japanese
V 26
dir 1-410.0.r428581/460157
K 4
java
V 25
dir 1-2798.0.r428692/7811
K 6
korean
V 27
dir 1-5873.0.r428152/898981
K 4
lang
V 24
dir 1-15.0.r428923/19197
K 4
mail
V 24
dir 1-57.0.r428917/41337
K 4
math
V 25
dir 1-162.0.r428921/38434
K 4
misc
V 25
dir 7-35.0.r428889/559033
K 10
multimedia
V 25
dir d-333.0.r428928/26604
K 3
net
V 24
dir 1-22.0.r428882/78776
K 6
net-im
V 28
dir 15-11144.0.r428720/10846
K 8
net-mgmt
V 26
dir r-1011.0.r428913/19502
K 7
net-p2p
V 28
dir g-29106.0.r428581/557858
K 4
news
V 24
dir 1-145.0.r428673/5360
K 4
palm
V 28
dir 1-6646.0.r428152/1229608
K 6
polish
V 27
dir tv-38973.0.r428751/2249
K 10
ports-mgmt
V 25
dir 1-5132.0.r428587/4812
K 10
portuguese
V 26
dir 1-17842.0.r426671/2214
K 5
print
V 24
dir 1-79.0.r428935/16575
K 7
russian
V 25
dir 1-1559.0.r428624/3731
K 7
science
V 26
dir n-5356.0.r428927/10740
K 8
security
V 25
dir 1-269.0.r428933/66389
K 6
shells
V 22
dir w-6.0.r428847/4155
K 8
sysutils
V 25
dir b-339.0.r428934/66033
K 8
textproc
V 25
dir 1-322.0.r428932/95031
K 9
ukrainian
V 29
dir g-39704.0.r428150/1199097
K 10
vietnamese
V 25
dir 1-4812.0.r426675/2930
K 3
www
V 26
dir 1-114.0.r428938/140808
K 3
x11
V 24
dir 1-16.0.r428916/26706
K 10
x11-clocks
V 27
dir 1-931.0.r428152/1730396
K 11
x11-drivers
V 27
dir 1-157567.0.r428258/4810
K 6
x11-fm
V 27
dir 1-691.0.r428152/1736263
K 9
x11-fonts
V 25
dir 1-543.0.r428529/11051
K 11
x11-servers
V 25
dir 1n-710.0.r427347/1612
K 10
x11-themes
V 29
dir 1-14410.0.r428152/1771168
K 12
x11-toolkits
V 26
dir 1-120.0.r428889/679416
K 6
x11-wm
V 23
dir 1-40.0.r428818/7739
END
ENDREP
id: 2-1.0.r428942/11781
type: dir
pred: 2-1.0.r428941/12159
count: 425125
text: 428942 8262 3506 0 f3905f696b601e0aa7a950d1aeeefb2e
props: 7322 2587 45 0 7a04b33bf8e35fd5c3d111baaf403dc5
cpath: /head
copyroot: 0 /

PLAIN
K 8
branches
V 23
dir 0-1.0.r428796/51138
K 4
head
V 23
dir 2-1.0.r428942/11781
K 8
projects
V 30
dir 0-377393.0.r378744/3577692
K 8
svnadmin
V 22
dir 3-1.0.r428591/1329
K 4
tags
V 22
dir 8-1.0.r421958/5118
END
ENDREP
id: 0.0.r428942/12220
type: dir
pred: 0.0.r428941/12598
count: 428942
text: 428942 11996 211 0 a021cc366b8e0bbc42c2276af09c7175
props: 341041 7130 346 0 8b695b9f61597e4917effffba3bbfaa3
cpath: /
copyroot: 0 /
minfo-cnt: 35

3-9066.0.t428941-96z2 modify-file true false /head/biology/Makefile

_4.0.t428941-96z2 add-dir false false /head/biology/p5-Bio-Coordinate

_5.0.t428941-96z2 add-file true true /head/biology/p5-Bio-Coordinate/Makefile

_8.0.t428941-96z2 add-file true true /head/biology/p5-Bio-Coordinate/distinfo

_a.0.t428941-96z2 add-file true true /head/biology/p5-Bio-Coordinate/pkg-descr

_c.0.t428941-96z2 add-file true true /head/biology/p5-Bio-Coordinate/pkg-plist


12220 12444