DELTA 448009 0 23 SVNƒ;ƒ<1–‚uF v DISTVERSION= 0.9.11ENDREP DELTA 448009 48 196 SVN==0€..9586555 SHA256 (bbuchfink-diamond-v0.9.11_GH0.tar.gz) = 7ec19864480d401b1c2c37582cf144fc6884f72ea713a2f0ec65dc304aa111fb SIZE (bbuchfink-diamond-v0.9.11_GH0.tar.gz) = 391682 ENDREP DELTA 416575 529 418 SVNƒ,„%‚x€‚ H;€jL‚`‚v7-11-03 03:31:11 UTC +++ CMakeLists.txt @@ -9,16 +9,6 @@ if(BUILD_STATIC) set(CMAKE_EXE_LINKER_FLAGS "-static") endif() -if(CMAKE_BUILD_MARCH) - set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=${CMAKE_BUILD_MARCH}") -else() - include(CheckCXXCompilerFlag) - if(COMPILER_SUPPORTS_MARCHNATIVE) - set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=native") - endif(ENDREP id: 5-414686.0.r453387/720 type: file pred: 5-414686.0.r448009/271 count: 35 text: 453387 0 42 444 e45ff7cc8dae980c859780a05d71bc21 cadb82fdbd8e7d02a7c05ce4d40b7b74d57b733d 453386-9pu3/_4 props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/diamond/Makefile copyroot: 0 / id: 8-414686.0.r453387/1017 type: file pred: 8-414686.0.r448009/568 count: 31 text: 453387 67 194 189 73ec2beb9e36610d92b54dc68d30ea69 1e4239e776cfbb0b13cbfafe24e0844bc9bb5582 453386-9pu3/_5 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/diamond/distinfo copyroot: 0 / id: b-414686.0.r453387/1318 type: file pred: b-414686.0.r416575/1574 count: 2 text: 453387 288 404 549 18ecb69144cc159008b8ec84c215b9bd c03205d9698819c4e67d8ee43a1f184202a9a76e 453386-9pu3/_7 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/diamond/files/patch-CMakeLists.txt copyroot: 0 / PLAIN K 20 patch-CMakeLists.txt V 28 file b-414686.0.r453387/1318 END ENDREP id: a-414686.0.r453387/1715 type: dir pred: a-414686.0.r416575/1971 count: 2 text: 453387 1638 64 0 dbb9f42f0559c9e0d49805f8477c1d93 cpath: /head/biology/diamond/files copyroot: 0 / PLAIN K 8 Makefile V 27 file 5-414686.0.r453387/720 K 8 distinfo V 28 file 8-414686.0.r453387/1017 K 5 files V 27 dir a-414686.0.r453387/1715 K 9 pkg-descr V 28 file e-414686.0.r414686/3155 END ENDREP id: 4-414686.0.r453387/2099 type: dir pred: 4-414686.0.r448009/1068 count: 35 text: 453387 1898 188 0 b3978fd2f72ef5214d8d13ee9ec0c17b cpath: /head/biology/diamond copyroot: 0 / PLAIN K 8 Makefile V 26 file 3-9066.0.r452595/1242 K 7 ariadne V 26 dir 4-111985.0.r451982/897 K 7 artemis V 25 dir 4-51988.0.r451981/625 K 5 avida V 27 dir 4-57919.0.r440746/57011 K 5 babel V 25 dir 2-9147.0.r395828/1878 K 8 bcftools V 27 dir 4-388638.0.r452840/9348 K 8 bedtools V 28 dir 4-406676.0.r441847/48854 K 8 biococoa V 27 dir 4-181036.0.r451982/1590 K 4 blat V 27 dir 4-157190.0.r443073/1216 K 6 bowtie V 29 dir 4-410180.0.r449591/220125 K 7 bowtie2 V 28 dir 4-411698.0.r449986/14086 K 3 bwa V 28 dir 4-397851.0.r441814/73568 K 6 cd-hit V 29 dir 4-397318.0.r449591/220820 K 8 cdbfasta V 29 dir 4-397850.0.r431996/102787 K 6 chemeq V 26 dir 5-153895.0.r428829/956 K 8 clustalw V 27 dir 2-30406.0.r415839/59059 K 6 consed V 29 dir 4-213590.0.r421387/169413 K 4 crux V 27 dir 4-235460.0.r451982/2324 K 7 diamond V 27 dir 4-414686.0.r453387/2099 K 6 emboss V 27 dir 4-31178.0.r418829/61873 K 5 fasta V 28 dir 4-38205.0.r424411/182405 K 6 fasta3 V 27 dir 4-38207.0.r415503/88636 K 9 fastdnaml V 28 dir 4-33727.0.r405891/192753 K 7 fastool V 28 dir 4-397849.0.r430490/50562 K 8 fasttree V 29 dir 4-397848.0.r449591/222210 K 13 fastx-toolkit V 29 dir 4-397847.0.r412344/719421 K 9 fluctuate V 25 dir 4-45885.0.r401907/565 K 6 garlic V 26 dir 4-85720.0.r371237/6475 K 6 gff2ps V 28 dir 4-51813.0.r412344/720078 K 4 gmap V 28 dir 4-174086.0.r440746/58432 K 9 gperiodic V 28 dir 2-21330.0.r428152/154803 K 6 grappa V 28 dir 4-44738.0.r415498/235859 K 5 hmmer V 26 dir 2-11871.0.r451981/1354 K 6 htslib V 28 dir 4-374729.0.r452840/11648 K 5 iolib V 28 dir 4-240487.0.r440746/59163 K 6 iqtree V 26 dir 4-452595.0.r452596/877 K 7 jalview V 29 dir 4-155905.0.r415498/236602 K 9 jellyfish V 29 dir 4-411785.0.r449591/222955 K 5 lagan V 28 dir 4-157464.0.r415503/89858 K 6 lamarc V 26 dir 4-45915.0.r428831/1297 K 13 libgtextutils V 29 dir 4-397846.0.r424427/101190 K 7 libsbml V 27 dir 4-234730.0.r441126/1709 K 19 linux-foldingathome V 29 dir 4-171590.0.r421387/170127 K 5 mafft V 29 dir 4-157209.0.r415498/237345 K 5 mapm3 V 29 dir 4-210625.0.r415498/238094 K 7 migrate V 26 dir 4-45878.0.r413499/2085 K 6 molden V 26 dir 2-18587.0.r453261/1019 K 5 mopac V 28 dir 2-18535.0.r449591/224334 K 7 mrbayes V 28 dir 4-203737.0.r444463/89156 K 6 mummer V 27 dir 4-203638.0.r453152/2788 K 6 muscle V 27 dir 4-213031.0.r425879/7950 K 11 ncbi-blast+ V 36 dir 4-370220.0-375848.r449591/225152 K 12 ncbi-toolkit V 27 dir 4-34402.0.r428135/12720 K 6 njplot V 33 dir 4-213034.0-426241.r427329/674 K 10 p5-AcePerl V 28 dir 4-31083.0.r449893/289326 K 22 p5-Bio-ASN1-EntrezGene V 29 dir 4-145476.0.r449893/290041 K 17 p5-Bio-Coordinate V 29 dir 4-428942.0.r449893/290761 K 10 p5-Bio-Das V 29 dir 4-141702.0.r449893/291475 K 15 p5-Bio-Das-Lite V 29 dir 4-250445.0.r449893/292189 K 16 p5-Bio-FeatureIO V 27 dir 4-449922.0.r449922/3059 K 11 p5-Bio-GFF3 V 29 dir 4-273031.0.r449893/292905 K 12 p5-Bio-Glite V 29 dir 4-231492.0.r412344/728199 K 15 p5-Bio-Graphics V 29 dir 4-229849.0.r449893/293616 K 14 p5-Bio-MAGETAB V 29 dir 4-236853.0.r412344/729641 K 12 p5-Bio-NEXUS V 29 dir 4-240135.0.r415498/240218 K 12 p5-Bio-Phylo V 29 dir 4-162248.0.r449893/294326 K 10 p5-Bio-SCF V 29 dir 4-240489.0.r412344/731789 K 10 p5-BioPerl V 35 dir 4-31084.0-428868.r449893/295144 K 14 p5-BioPerl-Run V 34 dir 4-161213.0-428872.r449927/2587 K 15 p5-transdecoder V 28 dir 4-411246.0.r430490/51263 K 4 paml V 27 dir 2-30407.0.r425174/64429 K 5 phrap V 27 dir 4-213596.0.r370983/3739 K 5 phred V 28 dir g-213596.0.r365765/23553 K 6 phylip V 28 dir 2-30408.0.r412344/734701 K 5 phyml V 27 dir 4-238140.0.r449234/1148 K 5 plink V 27 dir 4-304954.0.r451982/3006 K 8 plinkseq V 28 dir g-304954.0.r440746/59897 K 7 primer3 V 27 dir 4-66513.0.r354670/62518 K 8 protomol V 29 dir 4-161442.0.r441503/148085 K 5 psi88 V 28 dir 2-18534.0.r449591/226585 K 14 py-biom-format V 27 dir 4-414865.0.r439751/1067 K 12 py-biopython V 26 dir 4-31163.0.r448228/1002 K 12 py-bx-python V 27 dir 4-440232.0.r440232/2542 K 8 py-pysam V 27 dir 4-440231.0.r452904/1058 K 8 pycogent V 27 dir 4-236469.0.r419818/1200 K 7 pyfasta V 29 dir 4-244412.0.r415498/243704 K 12 python-nexus V 27 dir 4-246859.0.r446458/1012 K 9 recombine V 27 dir 4-45886.0.r418767/75989 K 8 ruby-bio V 26 dir 4-49156.0.r440343/1070 K 11 rubygem-bio V 34 dir 4-236468.0-433348.r433528/1273 K 8 samtools V 28 dir 4-374767.0.r452840/14024 K 7 seaview V 24 dir 2-9150.0.r446346/979 K 5 seqan V 27 dir 4-298619.0.r422156/2498 K 10 seqan-apps V 29 dir 4-414897.0.r450560/150761 K 6 seqan1 V 35 dir 4-298619.0-414898.r418767/76744 K 5 seqio V 25 dir 4-46640.0.r344538/970 K 8 seqtools V 28 dir 5-333374.0.r450351/82638 K 4 sim4 V 25 dir 4-31064.0.r344539/879 K 7 slclust V 29 dir 4-411697.0.r431996/103482 K 5 ssaha V 27 dir 4-215429.0.r451982/3694 K 11 tRNAscan-SE V 26 dir 4-56741.0.r451982/4380 K 8 t_coffee V 28 dir 4-53719.0.r449591/229413 K 6 tinker V 28 dir 2-14597.0.r449591/230153 K 10 treepuzzle V 28 dir 4-70552.0.r340722/506561 K 11 trimmomatic V 27 dir 4-411261.0.r411261/2756 K 5 ugene V 28 dir 4-312798.0.r450351/83378 K 8 vcftools V 28 dir 4-409624.0.r430483/48856 K 6 velvet V 26 dir 4-243919.0.r377443/787 K 4 wise V 28 dir 4-66053.0.r428152/155489 K 6 xmolwt V 28 dir 2-21329.0.r428152/156133 END ENDREP id: 1-9066.0.r453387/7501 type: dir pred: 1-9066.0.r453261/6417 count: 2176 text: 453387 2278 5210 0 5b0a65f78257d13c36d0e5466f91b31c cpath: /head/biology copyroot: 0 / PLAIN K 10 .arcconfig V 26 file 1-354154.0.r422906/41 K 14 .gitattributes V 27 file 1-411777.0.r411777/210 K 10 .gitignore V 26 file 1-348322.0.r376072/79 K 7 CHANGES V 26 file 1-99373.0.r452546/456 K 15 CONTRIBUTING.md V 27 file 1-348323.0.r348323/344 K 9 COPYRIGHT V 26 file 1-146787.0.r430107/51 K 4 GIDs V 28 file 1-168311.0.r452063/3091 K 8 Keywords V 27 dir 1-314142.0.r419368/1305 K 5 LEGAL V 24 file 1-748.0.r452080/197 K 5 MOVED V 28 file 1-69878.0.r453285/44730 K 8 Makefile V 24 file 1-6.0.r424411/75633 K 2 Mk V 23 dir 1-5.0.r453347/13483 K 6 README V 25 file 1-2408.0.r340854/956 K 9 Templates V 26 dir 1-2932.0.r446836/17760 K 5 Tools V 26 dir 3-15302.0.r453175/3273 K 4 UIDs V 28 file 4-168311.0.r452063/3372 K 8 UPDATING V 28 file 1-102685.0.r453244/2501 K 13 accessibility V 26 dir 1-42583.0.r453105/2310 K 6 arabic V 27 dir 1-38973.0.r453378/48682 K 9 archivers V 25 dir 1-242.0.r453284/19626 K 5 astro V 24 dir 1-301.0.r453057/8455 K 5 audio V 25 dir 1-148.0.r453324/48149 K 4 base V 28 dir 1-420954.0.r431796/79632 K 10 benchmarks V 23 dir 1-62.0.r453311/6007 K 7 biology V 25 dir 1-9066.0.r453387/7501 K 3 cad V 25 dir 1-276.0.r453381/20674 K 7 chinese V 26 dir 1-3770.0.r453378/55728 K 5 comms V 24 dir 1-76.0.r453381/33023 K 10 converters V 26 dir 1-1561.0.r453277/23132 K 9 databases V 25 dir 1-771.0.r453381/95528 K 9 deskutils V 26 dir 1-2098.0.r453384/15971 K 5 devel V 25 dir 1-73.0.r453381/456940 K 3 dns V 27 dir 1-6145.0.r453381/469113 K 7 editors V 24 dir 4-6.0.r453378/137889 K 9 emulators V 26 dir 1-181.0.r453381/479526 K 7 finance V 27 dir 1-4110.0.r453381/491312 K 6 french V 28 dir 1-25673.0.r453378/139777 K 3 ftp V 26 dir 1-199.0.r453381/497245 K 5 games V 26 dir 1-104.0.r453381/557957 K 6 german V 27 dir 1-7451.0.r453378/142107 K 8 graphics V 25 dir 1-94.0.r453381/616745 K 6 hebrew V 28 dir 3-31142.0.r453378/143444 K 9 hungarian V 29 dir 1p-38973.0.r453378/144909 K 3 irc V 25 dir 1-42.0.r453381/624124 K 8 japanese V 26 dir 1-410.0.r453381/640065 K 4 java V 25 dir 1-2798.0.r453336/8681 K 6 korean V 27 dir 1-5873.0.r453378/163693 K 4 lang V 25 dir 1-15.0.r453381/658344 K 4 mail V 25 dir 1-57.0.r453381/699986 K 4 math V 26 dir 1-162.0.r453381/741896 K 4 misc V 25 dir 7-35.0.r453381/768406 K 10 multimedia V 26 dir d-333.0.r453381/793416 K 3 net V 25 dir 1-22.0.r453381/879357 K 6 net-im V 29 dir 15-11144.0.r453381/891223 K 8 net-mgmt V 26 dir r-1011.0.r453374/21583 K 7 net-p2p V 26 dir g-29106.0.r453222/7892 K 4 news V 26 dir 1-145.0.r452517/595564 K 4 palm V 27 dir 1-6646.0.r451378/103414 K 6 polish V 29 dir tv-38973.0.r453378/165526 K 10 ports-mgmt V 25 dir 1-5132.0.r453287/4847 K 10 portuguese V 28 dir 1-17842.0.r453378/167964 K 5 print V 25 dir 1-79.0.r453381/908366 K 7 russian V 27 dir 1-1559.0.r453378/170926 K 7 science V 26 dir n-5356.0.r453334/25398 K 8 security V 25 dir 1-269.0.r453383/70302 K 6 shells V 22 dir w-6.0.r453353/3750 K 8 sysutils V 27 dir b-339.0.r453381/1064767 K 8 textproc V 25 dir 1-322.0.r453382/98689 K 9 ukrainian V 28 dir g-39704.0.r453378/172381 K 10 vietnamese V 27 dir 1-4812.0.r453378/174186 K 3 www V 26 dir 1-114.0.r453386/146220 K 3 x11 V 26 dir 1-16.0.r453381/1340739 K 10 x11-clocks V 25 dir 1-931.0.r452530/30861 K 11 x11-drivers V 27 dir 1-157567.0.r447735/4529 K 6 x11-fm V 27 dir 1-691.0.r453284/1228147 K 9 x11-fonts V 27 dir 1-543.0.r453381/1351857 K 11 x11-servers V 25 dir 1n-710.0.r452247/2645 K 10 x11-themes V 28 dir 1-14410.0.r452819/458394 K 12 x11-toolkits V 27 dir 1-120.0.r453238/1015250 K 6 x11-wm V 23 dir 1-40.0.r453101/7436 END ENDREP id: 2-1.0.r453387/11225 type: dir pred: 2-1.0.r453386/149945 count: 448325 text: 453387 7671 3541 0 1a7b047a9f00abccbfa48ab45d9c86f9 props: 7322 2587 45 0 7a04b33bf8e35fd5c3d111baaf403dc5 cpath: /head copyroot: 0 / PLAIN K 8 branches V 23 dir 0-1.0.r453335/99162 K 4 head V 23 dir 2-1.0.r453387/11225 K 8 projects V 24 dir 0-377393.0.r441387/0 K 8 svnadmin V 22 dir 3-1.0.r453168/1638 K 4 tags V 22 dir 8-1.0.r449812/5278 END ENDREP id: 0.0.r453387/11659 type: dir pred: 0.0.r453386/150383 count: 453387 text: 453387 11441 205 0 1945b4c5b219a9f8efe8127062f825f7 props: 341041 7130 346 0 8b695b9f61597e4917effffba3bbfaa3 cpath: / copyroot: 0 / minfo-cnt: 36 5-414686.0.t453386-9pu3 modify-file true false /head/biology/diamond/Makefile 8-414686.0.t453386-9pu3 modify-file true false /head/biology/diamond/distinfo b-414686.0.t453386-9pu3 modify-file true false /head/biology/diamond/files/patch-CMakeLists.txt 11659 11884