DELTA 466235 0 29 SVNk  \"IadapENDREP DELTA SVN# $FreeBSD$ PORTNAME= trimadap DISTVERSION= 0.1-3 DISTVERSIONSUFFIX= -gddfef21 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Trim adapter sequences from Illumina data using heuristic rules LICENSE= GPLv2 USE_GITHUB= yes GH_ACCOUNT= lh3 PLIST_FILES= bin/trimadap-mt CFLAGS_i386= -msse2 do-install: ${INSTALL_PROGRAM} ${WRKSRC}/trimadap-mt ${STAGEDIR}${PREFIX}/bin .include ENDREP DELTA SVN@B@@TIMESTAMP = 1522773176 SHA256 (lh3-trimadap-0.1-3-gddfef21_GH0.tar.gz) = c2c42a3257d37b12be3523ed0d4415bddd401d72b99b05ba4ae33afaa3c3f373 SIZE (lh3-trimadap-0.1-3-gddfef21_GH0.tar.gz) = 13138 ENDREP DELTA SVNu*uux^PMK@=grhNlRD#+ziPE/KMB>&vgRZ= "JjS5*}U8 #include #include +#include /************ * kt_for() * ENDREP DELTA SVN$&$$Trimadap is a small tool to trim adapter sequences from Illumina data. It performs SSE2-SW between each read and each adapter sequence and identifies adapter sequences with a few heuristic rules which can be found in the ta_trim1() function in trimadap-mt.c. The default adapters it uses are included in illumina.txt. These are typical Illumina adapters from paired-end sequencing. 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