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SVN  ƒ[ƒ]€ƒ[ƒ[# $FreeBSD$

PORTNAME=	smithwaterman
DISTVERSION=	g20160702
CATEGORIES=	biology

MAINTAINER=	jwb@FreeBSD.org
COMMENT=	Smith-waterman-gotoh alignment algorithm

LICENSE=	GPLv2

USES=		gmake
USE_LDCONFIG=	yes
USE_GITHUB=	yes
GH_ACCOUNT=	ekg
GH_TAGNAME=	2610e259611ae4cde8f03c72499d28f03f6d38a7

MAKEFILE=	${FILESDIR}/Makefile
INSTALL_TARGET=	install-strip

post-install:
	${RLN} ${STAGEDIR}${PREFIX}/lib/libsw.so.1 \
		${STAGEDIR}${PREFIX}/lib/libsw.so

.include <bsd.port.mk>
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SVN  ƒ@ƒB€ƒ@ƒ@The Smith-Waterman algorithm performs local sequence alignment; that is, for
determining similar regions between two strings of nucleic acid sequences or
protein sequences. Instead of looking at the entire sequence, the
Smith-Waterman algorithm compares segments of all possible lengths and
optimizes the similarity measure.  Gotoh and Atschul added optimizations making
it practical for larger problems.

WWW: https://github.com/ekg/smithwaterman
ENDREP
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SVN  ‚W‚Y€‚W‚Wbin/smithwaterman
include/smithwaterman/BandedSmithWaterman.h
include/smithwaterman/IndelAllele.h
include/smithwaterman/LeftAlign.h
include/smithwaterman/Mosaik.h
include/smithwaterman/Repeats.h
include/smithwaterman/SmithWatermanGotoh.h
include/smithwaterman/convert.h
include/smithwaterman/disorder.h
lib/libsw.a
lib/libsw.so
lib/libsw.so.1
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