DELTA 470575 0 30
SVN ˜A˜]
 ƒ † •H‚y-omegaENDREP
DELTA
SVN  ƒƒ€ƒƒ# $FreeBSD$

PORTNAME=	clustal-omega
DISTVERSION=	1.2.4
CATEGORIES=	biology
MASTER_SITES=	http://www.clustal.org/omega/

MAINTAINER=	jwb@FreeBSD.org
COMMENT=	Multiple alignment of nucleic acid and protein, replaces clustalw

LICENSE=	GPLv2
LICENSE_FILE=	${WRKSRC}/COPYING

LIB_DEPENDS=	libargtable2.so:devel/argtable

USES=		libtool localbase

GNU_CONFIGURE=	yes

.include <bsd.port.mk>
ENDREP
DELTA
SVN  *,€**TIMESTAMP = 1526846209
SHA256 (clustal-omega-1.2.4.tar.gz) = 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee
SIZE (clustal-omega-1.2.4.tar.gz) = 1170516
ENDREP
DELTA
SVN  ƒ+ƒ-€ƒ+ƒ+Clustal Omega is the latest addition to the Clustal family. It offers a
significant increase in scalability over previous versions, allowing hundreds
of thousands of sequences to be aligned in only a few hours. It will also make
use of multiple processors, where present. In addition, the quality of
alignments is superior to previous versions, as measured by a range of popular
benchmarks.

WWW: http://www.clustal.org/omega/
ENDREP
DELTA
SVN  ˆ‚€ˆˆx^…“±nÃ †w¿‡Ç˜¥ê^Õ:T•Ò°0\àd˜ƒ¸}ûÚJÉ¾ Ä÷ÿ	èÑå
eéB…~jxLlƒSÁÈ“
þŠ¦±O<FÖJ‡Æws’1BâÔ!—è ‹YÍ.‘{Ð,/¤–Srà´5E§‘2+¥`qÁÄâßq”9á'=[2:ŽÏ€ÆæÝ˜ÿ÷#xHrw—M±öZ¼Ú3h*¨…„¯/Çx¤ÝWt‡i8f4­¡vKÛ„¥gp‚.I¯ÃÈ8ÄF9¨ÁÇ­Ï!Î2+{¬Ü@åBd
¹A"~öbioä:£e–"æþg‹›¨ªºn¿Þ¿ÛK]‹Ëù­ý<Wq–… ENDREP
id: 3-9066.0.r470582/1428
type: file
pred: 3-9066.0.r470575/1537
count: 195
text: 470582 0 29 3165 b0fe0a7372560ac97dd58779140a502c d884e487d0a64153742412e35fd4dd1329f1b255 470581-a33q/_3
props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5
cpath: /head/biology/Makefile
copyroot: 0 /

id: 5-470582.0.r470582/1717
type: file
count: 0
text: 470582 54 404 387 6469265ac719383a22668119045a3737 e02f808c9faccb83f7c57c2946bbb91b31d1cb02 470581-a33q/_7
props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5
cpath: /head/biology/clustal-omega/Makefile
copyroot: 0 /

id: 8-470582.0.r470582/1993
type: file
count: 0
text: 470582 471 187 170 07bdd4277fda2e392951c7a42161057b 423a085836d392c5f4a673a689fd075061e48fc1 470581-a33q/_9
props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce
cpath: /head/biology/clustal-omega/distinfo
copyroot: 0 /

id: a-470582.0.r470582/2271
type: file
count: 0
text: 470582 671 444 427 f24496f272844e1614127c521ecc0dca e7c8bffa8d8e375c78dce7ec151dfe78b0417839 470581-a33q/_b
props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce
cpath: /head/biology/clustal-omega/pkg-descr
copyroot: 0 /

id: c-470582.0.r470582/2550
type: file
count: 0
text: 470582 1128 287 1030 abd0b2378e0331a74e7883ede53de8a1 ed5519dd3259b5003d53af4d6508f578b9089f97 470581-a33q/_d
props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce
cpath: /head/biology/clustal-omega/pkg-plist
copyroot: 0 /

PLAIN
K 8
Makefile
V 28
file 5-470582.0.r470582/1717
K 8
distinfo
V 28
file 8-470582.0.r470582/1993
K 9
pkg-descr
V 28
file a-470582.0.r470582/2271
K 9
pkg-plist
V 28
file c-470582.0.r470582/2550
END
ENDREP
id: 4-470582.0.r470582/3038
type: dir
count: 0
text: 470582 2831 194 0 ced89a58613d8034491dd0e4a6c10146
cpath: /head/biology/clustal-omega
copyroot: 0 /

PLAIN
K 8
Makefile
V 26
file 3-9066.0.r470582/1428
K 7
ariadne
V 28
dir 4-111985.0.r469100/65478
K 7
artemis
V 25
dir 4-51988.0.r451981/625
K 5
avida
V 26
dir 4-57919.0.r456901/4444
K 5
babel
V 25
dir 2-9147.0.r395828/1878
K 8
bamtools
V 27
dir 4-465808.0.r465808/4356
K 8
bcftools
V 27
dir 4-388638.0.r455518/8607
K 8
bedtools
V 27
dir 4-406676.0.r467783/3231
K 8
biococoa
V 28
dir 4-181036.0.r455401/69606
K 4
blat
V 27
dir 4-157190.0.r443073/1216
K 6
bowtie
V 29
dir 4-410180.0.r464084/186937
K 7
bowtie2
V 27
dir 4-411698.0.r455161/2717
K 3
bwa
V 28
dir 4-397851.0.r460452/50803
K 4
canu
V 27
dir 4-456950.0.r468321/3882
K 6
cd-hit
V 29
dir 4-397318.0.r464084/188368
K 8
cdbfasta
V 28
dir 4-397850.0.r460452/52177
K 6
chemeq
V 26
dir 5-153895.0.r428829/956
K 13
clustal-omega
V 27
dir 4-470582.0.r470582/3038
K 8
clustalw
V 26
dir 2-30406.0.r470494/1388
K 8
clustalx
V 27
dir 4-470575.0.r470575/3411
K 6
consed
V 29
dir 4-213590.0.r421387/169413
K 4
crux
V 28
dir 4-235460.0.r469100/66214
K 7
ddocent
V 28
dir 4-467808.0.r467808/10680
K 7
diamond
V 27
dir 4-414686.0.r469925/1065
K 6
emboss
V 27
dir 4-31178.0.r418829/61873
K 5
fasta
V 28
dir 4-38205.0.r424411/182405
K 6
fasta3
V 27
dir 4-38207.0.r415503/88636
K 9
fastahack
V 27
dir 4-467485.0.r467485/4193
K 9
fastdnaml
V 28
dir 4-33727.0.r405891/192753
K 7
fastool
V 28
dir 4-397849.0.r460452/52822
K 6
fastqc
V 27
dir 4-455236.0.r455236/4852
K 8
fasttree
V 26
dir 4-397848.0.r464907/720
K 13
fastx-toolkit
V 27
dir 4-397847.0.r470124/1637
K 9
fluctuate
V 25
dir 4-45885.0.r401907/565
K 9
freebayes
V 28
dir 4-467806.0.r467806/12188
K 6
garlic
V 27
dir 4-85720.0.r464164/16579
K 6
gff2ps
V 28
dir 4-51813.0.r412344/720078
K 4
gmap
V 28
dir 4-174086.0.r460452/54270
K 9
gperiodic
V 28
dir 2-21330.0.r428152/154803
K 6
grappa
V 28
dir 4-44738.0.r415498/235859
K 5
hmmer
V 25
dir 2-11871.0.r456588/886
K 6
htslib
V 28
dir 4-374729.0.r452840/11648
K 5
hyphy
V 27
dir 4-469604.0.r469922/1367
K 5
iolib
V 28
dir 4-240487.0.r440746/59163
K 6
iqtree
V 27
dir 4-452595.0.r469673/1010
K 7
jalview
V 29
dir 4-155905.0.r415498/236602
K 9
jellyfish
V 28
dir 4-411785.0.r460452/55004
K 8
kallisto
V 26
dir 4-455382.0.r455384/769
K 5
lagan
V 28
dir 4-157464.0.r415503/89858
K 6
lamarc
V 26
dir 4-45915.0.r428831/1297
K 13
libgtextutils
V 27
dir 4-397846.0.r465904/1530
K 7
libsbml
V 27
dir 4-234730.0.r457754/2333
K 19
linux-foldingathome
V 29
dir 4-171590.0.r421387/170127
K 5
mafft
V 29
dir 4-157209.0.r415498/237345
K 5
mapm3
V 29
dir 4-210625.0.r415498/238094
K 7
migrate
V 25
dir 4-45878.0.r464909/778
K 6
molden
V 26
dir 2-18587.0.r470488/1024
K 5
mopac
V 28
dir 2-18535.0.r464084/191818
K 7
mrbayes
V 28
dir 4-203737.0.r444463/89156
K 6
mummer
V 27
dir 4-203638.0.r453152/2788
K 6
muscle
V 27
dir 4-213031.0.r425879/7950
K 11
ncbi-blast+
V 34
dir 4-370220.0-375848.r465726/7666
K 12
ncbi-toolkit
V 27
dir 4-34402.0.r428135/12720
K 6
njplot
V 33
dir 4-213034.0-426241.r427329/674
K 10
p5-AcePerl
V 28
dir 4-31083.0.r449893/289326
K 22
p5-Bio-ASN1-EntrezGene
V 29
dir 4-145476.0.r449893/290041
K 17
p5-Bio-Coordinate
V 29
dir 4-428942.0.r449893/290761
K 10
p5-Bio-Das
V 29
dir 4-141702.0.r449893/291475
K 15
p5-Bio-Das-Lite
V 29
dir 4-250445.0.r449893/292189
K 16
p5-Bio-FeatureIO
V 27
dir 4-449922.0.r449922/3059
K 11
p5-Bio-GFF3
V 29
dir 4-273031.0.r449893/292905
K 12
p5-Bio-Glite
V 29
dir 4-231492.0.r412344/728199
K 15
p5-Bio-Graphics
V 29
dir 4-229849.0.r449893/293616
K 14
p5-Bio-MAGETAB
V 29
dir 4-236853.0.r412344/729641
K 12
p5-Bio-NEXUS
V 29
dir 4-240135.0.r415498/240218
K 12
p5-Bio-Phylo
V 27
dir 4-162248.0.r457333/1867
K 10
p5-Bio-SCF
V 29
dir 4-240489.0.r412344/731789
K 10
p5-BioPerl
V 35
dir 4-31084.0-428868.r449893/295144
K 14
p5-BioPerl-Run
V 34
dir 4-161213.0-428872.r449927/2587
K 13
p5-TrimGalore
V 27
dir 4-455857.0.r455857/2967
K 15
p5-transdecoder
V 29
dir 4-411246.0.r464084/193388
K 4
paml
V 25
dir 2-30407.0.r468355/543
K 5
pbbam
V 27
dir 4-468100.0.r468100/3882
K 8
pbcopper
V 27
dir 4-468101.0.r468101/4478
K 7
pbseqan
V 27
dir 4-467901.0.r467901/7172
K 11
pear-merger
V 27
dir 4-466449.0.r466449/2292
K 5
phrap
V 27
dir 4-213596.0.r370983/3739
K 5
phred
V 28
dir g-213596.0.r365765/23553
K 6
phylip
V 26
dir 2-30408.0.r457755/1052
K 5
phyml
V 27
dir 4-238140.0.r469992/1083
K 5
plink
V 28
dir 4-304954.0.r469100/66901
K 8
plinkseq
V 28
dir g-304954.0.r460452/58702
K 7
primer3
V 27
dir 4-66513.0.r354670/62518
K 8
protomol
V 29
dir 4-161442.0.r441503/148085
K 5
psi88
V 28
dir 2-18534.0.r464084/194779
K 14
py-biom-format
V 29
dir 4-414865.0.r464084/195428
K 12
py-biopython
V 25
dir 4-31163.0.r469835/861
K 12
py-bx-python
V 29
dir 4-440232.0.r464084/196741
K 11
py-cutadapt
V 29
dir 4-455154.0.r468282/130975
K 8
py-macs2
V 29
dir 4-455383.0.r464084/197392
K 8
py-pysam
V 29
dir 4-440231.0.r468282/131669
K 8
pycogent
V 29
dir 4-236469.0.r464084/198040
K 7
pyfasta
V 29
dir 4-244412.0.r464084/198694
K 12
python-nexus
V 27
dir 4-246859.0.r466142/1427
K 7
rainbow
V 27
dir 4-466235.0.r466235/3394
K 9
recombine
V 27
dir 4-45886.0.r418767/75989
K 8
ruby-bio
V 26
dir 4-49156.0.r440343/1070
K 11
rubygem-bio
V 34
dir 4-236468.0-433348.r433528/1273
K 8
samtools
V 27
dir 4-374767.0.r455518/9341
K 7
seaview
V 25
dir 2-9150.0.r468198/1133
K 5
seqan
V 27
dir 4-298619.0.r464043/3649
K 10
seqan-apps
V 29
dir 4-414897.0.r467711/287158
K 6
seqan1
V 35
dir 4-298619.0-414898.r418767/76744
K 5
seqio
V 25
dir 4-46640.0.r454906/710
K 5
seqtk
V 27
dir 4-466379.0.r466379/3116
K 8
seqtools
V 26
dir 5-333374.0.r456096/594
K 4
sim4
V 25
dir 4-31064.0.r344539/879
K 7
slclust
V 28
dir 4-411697.0.r460452/59392
K 13
smithwaterman
V 27
dir 4-467402.0.r467402/4868
K 5
ssaha
V 28
dir 4-215429.0.r469100/67594
K 6
stacks
V 27
dir 4-466048.0.r466048/4998
K 11
tRNAscan-SE
V 27
dir 4-56741.0.r469100/68285
K 8
t_coffee
V 28
dir 4-53719.0.r464084/200081
K 7
tabixpp
V 27
dir 4-467343.0.r467343/3875
K 6
tinker
V 28
dir 2-14597.0.r464084/200819
K 10
treepuzzle
V 28
dir 4-70552.0.r340722/506561
K 8
trimadap
V 27
dir 4-466367.0.r466367/3871
K 11
trimmomatic
V 28
dir 4-411261.0.r460452/60087
K 5
ugene
V 27
dir 4-312798.0.r470045/2534
K 9
unanimity
V 27
dir 4-468214.0.r468214/8858
K 6
vcflib
V 27
dir 4-467553.0.r467553/8162
K 8
vcftools
V 28
dir 4-409624.0.r460452/60781
K 6
velvet
V 28
dir 4-243919.0.r458761/11452
K 4
wise
V 28
dir 4-66053.0.r428152/155489
K 6
xmolwt
V 28
dir 2-21329.0.r428152/156133
END
ENDREP
id: 1-9066.0.r470582/9569
type: dir
pred: 1-9066.0.r470575/9885
count: 2291
text: 470582 3192 6364 0 dbfdc584103fea17d380a713e06cfe2a
cpath: /head/biology
copyroot: 0 /

PLAIN
K 10
.arcconfig
V 26
file 1-354154.0.r422906/41
K 14
.gitattributes
V 26
file 1-411777.0.r467740/54
K 11
.gitauthors
V 26
file 1-467739.0.r470275/76
K 10
.gitignore
V 26
file 1-348322.0.r458023/77
K 11
.gitmessage
V 27
file 3-457790.0.r457790/987
K 7
CHANGES
V 27
file 1-99373.0.r469307/1015
K 15
CONTRIBUTING.md
V 27
file 1-348323.0.r348323/344
K 9
COPYRIGHT
V 26
file 1-146787.0.r457728/49
K 4
GIDs
V 28
file 1-168311.0.r470038/1204
K 8
Keywords
V 27
dir 1-314142.0.r419368/1305
K 5
LEGAL
V 25
file 1-748.0.r469272/2904
K 5
MOVED
V 26
file 1-69878.0.r470476/250
K 8
Makefile
V 21
file 1-6.0.r460340/56
K 2
Mk
V 22
dir 1-5.0.r470540/8580
K 6
README
V 24
file 1-2408.0.r469089/62
K 9
Templates
V 24
dir 1-2932.0.r464716/806
K 5
Tools
V 26
dir 3-15302.0.r470568/3266
K 4
UIDs
V 28
file 4-168311.0.r470038/1486
K 8
UPDATING
V 28
file 1-102685.0.r470293/2716
K 13
accessibility
V 26
dir 1-42583.0.r470560/3608
K 6
arabic
V 27
dir 1-38973.0.r469498/48450
K 9
archivers
V 25
dir 1-242.0.r470550/13849
K 5
astro
V 24
dir 1-301.0.r470381/7597
K 5
audio
V 25
dir 1-148.0.r470573/49023
K 4
base
V 27
dir 1-420954.0.r470018/1571
K 10
benchmarks
V 23
dir 1-62.0.r470227/5445
K 7
biology
V 25
dir 1-9066.0.r470582/9569
K 3
cad
V 24
dir 1-276.0.r470411/5439
K 7
chinese
V 26
dir 1-3770.0.r470554/16343
K 5
comms
V 25
dir 1-76.0.r470288/116278
K 10
converters
V 26
dir 1-1561.0.r470524/10854
K 9
databases
V 25
dir 1-771.0.r470561/60502
K 9
deskutils
V 26
dir 1-2098.0.r470289/17254
K 5
devel
V 25
dir 1-73.0.r470579/339896
K 3
dns
V 26
dir 1-6145.0.r470572/12859
K 7
editors
V 23
dir 4-6.0.r470425/14255
K 9
emulators
V 25
dir 1-181.0.r470448/10133
K 7
finance
V 26
dir 1-4110.0.r469967/20942
K 6
french
V 28
dir 1-25673.0.r469498/132389
K 3
ftp
V 24
dir 1-199.0.r470422/8511
K 5
games
V 25
dir 1-104.0.r470532/65548
K 6
german
V 25
dir 1-7451.0.r470495/2684
K 8
graphics
V 24
dir 1-94.0.r470567/59840
K 6
hebrew
V 28
dir 3-31142.0.r469498/135952
K 9
hungarian
V 29
dir 1p-38973.0.r469498/137367
K 3
irc
V 23
dir 1-42.0.r469726/7393
K 8
japanese
V 25
dir 1-410.0.r470426/16289
K 4
java
V 26
dir 1-2798.0.r470492/24795
K 6
korean
V 27
dir 1-5873.0.r469498/156090
K 4
lang
V 24
dir 1-15.0.r470540/29228
K 4
mail
V 24
dir 1-57.0.r470574/49362
K 4
math
V 25
dir 1-162.0.r470562/43705
K 4
misc
V 24
dir 7-35.0.r470509/29577
K 10
multimedia
V 25
dir d-333.0.r470528/26303
K 3
net
V 24
dir 1-22.0.r470543/83213
K 6
net-im
V 28
dir 15-11144.0.r470455/12002
K 8
net-mgmt
V 26
dir r-1011.0.r470482/23375
K 7
net-p2p
V 26
dir g-29106.0.r470450/6666
K 4
news
V 24
dir 1-145.0.r468686/9804
K 4
palm
V 28
dir 1-6646.0.r464084/1693680
K 6
polish
V 27
dir tv-38973.0.r470496/2191
K 10
ports-mgmt
V 25
dir 1-5132.0.r470535/5571
K 10
portuguese
V 28
dir 1-17842.0.r469498/160164
K 5
print
V 25
dir 1-79.0.r470288/774168
K 7
russian
V 27
dir 1-1559.0.r469498/163087
K 7
science
V 26
dir n-5356.0.r470530/14703
K 8
security
V 25
dir 1-269.0.r470581/72239
K 6
shells
V 24
dir w-6.0.r469132/113001
K 8
sysutils
V 25
dir b-339.0.r470559/77819
K 8
textproc
V 26
dir 1-322.0.r470566/100594
K 9
ukrainian
V 28
dir g-39704.0.r469498/164488
K 10
vietnamese
V 27
dir 1-4812.0.r469498/166236
K 3
www
V 26
dir 1-114.0.r470580/148482
K 3
x11
V 24
dir 1-16.0.r470577/30035
K 10
x11-clocks
V 27
dir 1-931.0.r469610/1370590
K 11
x11-drivers
V 27
dir 1-157567.0.r468904/4653
K 6
x11-fm
V 24
dir 1-691.0.r470108/6171
K 9
x11-fonts
V 25
dir 1-543.0.r470044/12076
K 11
x11-servers
V 25
dir 1n-710.0.r470462/2150
K 10
x11-themes
V 27
dir 1-14410.0.r470398/50210
K 12
x11-toolkits
V 27
dir 1-120.0.r470309/1172548
K 6
x11-wm
V 23
dir 1-40.0.r470458/8326
END
ENDREP
id: 2-1.0.r470582/13356
type: dir
pred: 2-1.0.r470581/76029
count: 464644
text: 470582 9739 3604 0 e808a19ebfdb9fdcc41c0e35395188ac
props: 458023 3927 157 0 4d85142843815bcc29c89469bccb873c
cpath: /head
copyroot: 0 /

PLAIN
K 8
branches
V 23
dir 0-1.0.r470508/20350
K 4
head
V 23
dir 2-1.0.r470582/13356
K 8
projects
V 24
dir 0-377393.0.r441387/0
K 8
svnadmin
V 22
dir 3-1.0.r470484/1254
K 4
tags
V 22
dir 8-1.0.r449812/5278
END
ENDREP
id: 0.0.r470582/13792
type: dir
pred: 0.0.r470581/76467
count: 470582
text: 470582 13574 205 0 45f053fd5fa68bc0b14582f31e89c269
props: 341041 7130 346 0 8b695b9f61597e4917effffba3bbfaa3
cpath: /
copyroot: 0 /
minfo-cnt: 38

3-9066.0.t470581-a33q modify-file true false /head/biology/Makefile

_4.0.t470581-a33q add-dir false false /head/biology/clustal-omega

_5.0.t470581-a33q add-file true true /head/biology/clustal-omega/Makefile

_8.0.t470581-a33q add-file true true /head/biology/clustal-omega/distinfo

_a.0.t470581-a33q add-file true true /head/biology/clustal-omega/pkg-descr

_c.0.t470581-a33q add-file true true /head/biology/clustal-omega/pkg-plist


13792 14016