DELTA 487239 299 22 SVN (mfastTSNEENDREP DELTA SVNx^Qk0_ah޺i`9Ա4FTT%o>9 -`Bs>+t6=ckҼA|#Ťx@9S; x=Kߩ8j4OI@ $.&3"D٦&rMwf?b, ƅ](q9i \*S!pykYgӮl\3҃]"L@ᅻ`OǻPpD^}=o]iwjly:UWLldWRU ?aOG2q7] }g'v:SnvC\; p\0wS|O忁`_y-Ez˩|wj`.T–@P3skdo`?A%ENDREP DELTA SVN!#!!TIMESTAMP = 1544862153 SHA256 (fastTSNE-0.2.13.tar.gz) = c602acf5e61f80bdda1bdfe91838ec89d7fdbdbb072e54c0d8da31c35fc964a0 SIZE (fastTSNE-0.2.13.tar.gz) = 687321 ENDREP DELTA SVN<><<--- setup.py.orig 2018-12-15 08:37:12 UTC +++ setup.py @@ -87,7 +87,8 @@ extensions = [ ] # Check if we have access to FFTW3 and if so, use that implementation -if has_c_library('fftw3'): +# has_c_library fails to use CFLAGS: https://github.com/pavlin-policar/fastTSNE/issues/43 +if True or has_c_library('fftw3'): lm_opt = '/lm' if IS_WINDOWS else '-lm' fftw3_opt = '/lfftw3' if IS_WINDOWS else '-lfftw3' extensions.append( ENDREP DELTA SVN+-++Fast, parallel implementations of t-SNE allows, for example, in one case to visualize 160,796 single cell transcriptomes from the mouse nervous system computed in under 2 minutes using FFT accelerated interpolation and approximate nearest neighbors. WWW: https://github.com/pavlin-policar/fastTSNE ENDREP id: 3-9066.0.r487491/1492 type: file pred: 3-9066.0.r487239/629 count: 218 text: 487491 0 31 3485 4988491c7851df3f1909ce35883709c7 5e544c7f9c47011158220db5869db3be0c0868bc 487490-ag5f/_3 props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/Makefile copyroot: 0 / id: 5-487491.0.r487491/1780 type: file count: 0 text: 487491 58 427 670 b05578718c211b1e177f34f8c31e38bf 3ba431fdcf1b1fd0da69b92453e8da9c062ce0f3 487490-ag5f/_7 props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/py-fastTSNE/Makefile copyroot: 0 / id: 8-487491.0.r487491/2054 type: file count: 0 text: 487491 498 178 161 2f21b28b24ad854f2a1faf228453a16e e6c0bde0acaf292412cccccd46e50a00fe7ba9cc 487490-ag5f/_9 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/py-fastTSNE/distinfo copyroot: 0 / id: b-487491.0.r487491/2330 type: file count: 0 text: 487491 689 461 444 de5167d5bd6c3c2ce83a4792bc278e15 b2f2853c496a34bfe8ce4566456b5aceeb79c127 487490-ag5f/_d props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/py-fastTSNE/files/patch-setup.py copyroot: 0 / PLAIN K 14 patch-setup.py V 28 file b-487491.0.r487491/2330 END ENDREP id: a-487491.0.r487491/2689 type: dir count: 0 text: 487491 2618 58 0 23a2a5d679b1f6202bb7f68e93e0906e cpath: /head/biology/py-fastTSNE/files copyroot: 0 / id: e-487491.0.r487491/2846 type: file count: 0 text: 487491 1163 316 299 3e8db5cd7dcabfc555cf87b50d3ad148 f92aba72bf7aab5cdbb127a80475ed8d57ed9c7f 487490-ag5f/_f props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/py-fastTSNE/pkg-descr copyroot: 0 / PLAIN K 8 Makefile V 28 file 5-487491.0.r487491/1780 K 8 distinfo V 28 file 8-487491.0.r487491/2054 K 5 files V 27 dir a-487491.0.r487491/2689 K 9 pkg-descr V 28 file e-487491.0.r487491/2846 END ENDREP id: 4-487491.0.r487491/3326 type: dir count: 0 text: 487491 3124 189 0 4b49ea2beed08dc3021e69b734b95d9e cpath: /head/biology/py-fastTSNE copyroot: 0 / PLAIN K 8 Makefile V 26 file 3-9066.0.r487491/1492 K 7 artemis V 26 dir 4-51988.0.r472197/3128 K 5 avida V 25 dir 4-57919.0.r477993/563 K 5 babel V 25 dir 2-9147.0.r395828/1878 K 8 bamtools V 27 dir 4-465808.0.r465808/4356 K 8 bcftools V 27 dir 4-388638.0.r476247/3487 K 8 bedtools V 29 dir 4-406676.0.r487272/453425 K 8 biococoa V 28 dir 4-181036.0.r480741/79036 K 6 bowtie V 29 dir 4-410180.0.r487272/454165 K 7 bowtie2 V 29 dir 4-411698.0.r481833/114939 K 3 bwa V 28 dir 4-397851.0.r460452/50803 K 4 canu V 29 dir 4-456950.0.r487272/454905 K 6 cd-hit V 29 dir 4-397318.0.r487272/455602 K 8 cdbfasta V 28 dir 4-397850.0.r460452/52177 K 6 checkm V 29 dir 4-486814.0.r487272/456251 K 6 chemeq V 26 dir 5-153895.0.r428829/956 K 13 clustal-omega V 27 dir 4-470582.0.r470582/3038 K 8 clustalw V 26 dir 2-30406.0.r470494/1388 K 8 clustalx V 29 dir 4-470575.0.r486467/180948 K 6 consed V 29 dir 4-213590.0.r421387/169413 K 9 cytoscape V 27 dir 4-473806.0.r476967/1063 K 7 ddocent V 29 dir 4-467808.0.r487272/456991 K 7 diamond V 27 dir 4-414686.0.r469925/1065 K 6 emboss V 27 dir 4-31178.0.r418829/61873 K 9 exonerate V 27 dir 4-474558.0.r474558/2994 K 5 fasta V 28 dir 4-38205.0.r424411/182405 K 6 fasta3 V 27 dir 4-38207.0.r415503/88636 K 9 fastahack V 27 dir 4-467485.0.r467485/4193 K 9 fastdnaml V 28 dir 4-33727.0.r405891/192753 K 7 fastool V 28 dir 4-397849.0.r460452/52822 K 6 fastqc V 27 dir 4-455236.0.r455236/4852 K 8 fasttree V 29 dir 4-397848.0.r487272/457686 K 13 fastx-toolkit V 27 dir 4-397847.0.r470124/1637 K 9 fluctuate V 25 dir 4-45885.0.r401907/565 K 9 freebayes V 29 dir 4-467806.0.r487272/458384 K 6 garlic V 27 dir 4-85720.0.r464164/16579 K 4 gatk V 27 dir 4-486502.0.r486619/2215 K 6 gff2ps V 28 dir 4-51813.0.r412344/720078 K 4 gmap V 28 dir 4-174086.0.r460452/54270 K 9 gperiodic V 28 dir 2-21330.0.r428152/154803 K 6 grappa V 28 dir 4-44738.0.r415498/235859 K 6 groopm V 29 dir 4-486812.0.r487272/459033 K 5 hmmer V 26 dir 2-11871.0.r474455/2215 K 6 htslib V 27 dir 4-374729.0.r476245/1144 K 5 hyphy V 29 dir 4-469604.0.r487272/459766 K 3 igv V 27 dir 4-473356.0.r486619/2884 K 8 infernal V 26 dir 4-471850.0.r480834/606 K 5 iolib V 27 dir 4-240487.0.r484210/2047 K 6 iqtree V 29 dir 4-452595.0.r487272/460410 K 7 jalview V 29 dir 4-155905.0.r415498/236602 K 9 jellyfish V 29 dir 4-411785.0.r487272/461154 K 8 kallisto V 29 dir 4-455382.0.r487272/461851 K 5 lagan V 28 dir 4-157464.0.r415503/89858 K 6 lamarc V 25 dir 4-45915.0.r477992/560 K 13 libgtextutils V 27 dir 4-397846.0.r465904/1530 K 7 libsbml V 26 dir 4-234730.0.r477994/571 K 19 linux-foldingathome V 26 dir 4-171590.0.r475407/588 K 5 mafft V 29 dir 4-157209.0.r415498/237345 K 5 mapm3 V 29 dir 4-210625.0.r415498/238094 K 7 migrate V 25 dir 4-45878.0.r464909/778 K 6 molden V 28 dir 2-18587.0.r487272/462541 K 5 mopac V 28 dir 2-18535.0.r487272/463232 K 7 mrbayes V 28 dir 4-203737.0.r444463/89156 K 6 mummer V 29 dir 4-203638.0.r487272/463967 K 6 muscle V 27 dir 4-213031.0.r425879/7950 K 11 ncbi-blast+ V 36 dir 4-370220.0-375848.r487272/464791 K 16 ncbi-cxx-toolkit V 29 dir 4-481520.0.r487272/465542 K 12 ncbi-toolkit V 26 dir 4-34402.0.r484211/1506 K 7 ngs-sdk V 27 dir 4-472158.0.r482381/1437 K 10 p5-AcePerl V 28 dir 4-31083.0.r481365/409824 K 22 p5-Bio-ASN1-EntrezGene V 27 dir 4-145476.0.r481714/1306 K 17 p5-Bio-Coordinate V 29 dir 4-428942.0.r481365/411271 K 10 p5-Bio-Das V 29 dir 4-141702.0.r481365/411991 K 15 p5-Bio-Das-Lite V 29 dir 4-250445.0.r481365/412708 K 16 p5-Bio-FeatureIO V 29 dir 4-449922.0.r481365/413425 K 11 p5-Bio-GFF3 V 29 dir 4-273031.0.r481365/414141 K 12 p5-Bio-Glite V 29 dir 4-231492.0.r481365/414857 K 15 p5-Bio-Graphics V 29 dir 4-229849.0.r481365/415573 K 14 p5-Bio-MAGETAB V 29 dir 4-236853.0.r481365/416293 K 12 p5-Bio-NEXUS V 29 dir 4-240135.0.r481365/417012 K 12 p5-Bio-Phylo V 29 dir 4-162248.0.r481365/417723 K 10 p5-Bio-SCF V 29 dir 4-240489.0.r481365/418436 K 10 p5-BioPerl V 35 dir 4-31084.0-428868.r481365/419256 K 14 p5-BioPerl-Run V 36 dir 4-161213.0-428872.r481365/420123 K 13 p5-TrimGalore V 27 dir 4-455857.0.r455857/2967 K 15 p5-transdecoder V 29 dir 4-411246.0.r487272/466256 K 4 paml V 25 dir 2-30407.0.r468355/543 K 5 pbbam V 29 dir 4-468100.0.r487272/466961 K 8 pbcopper V 29 dir 4-468101.0.r487272/467703 K 7 pbseqan V 27 dir 4-467901.0.r467901/7172 K 11 pear-merger V 28 dir 4-466449.0.r473009/64316 K 5 phrap V 29 dir 4-213596.0.r479406/209738 K 5 phred V 29 dir g-213596.0.r479406/210432 K 6 phylip V 26 dir 2-30408.0.r457755/1052 K 5 phyml V 27 dir 4-238140.0.r480425/7324 K 8 plinkseq V 28 dir g-304954.0.r460452/58702 K 7 primer3 V 26 dir 4-66513.0.r477995/1037 K 8 protomol V 26 dir 4-161442.0.r477997/613 K 5 psi88 V 28 dir 2-18534.0.r487272/468397 K 16 py-Genesis-PyAPI V 29 dir 4-472277.0.r472884/413833 K 14 py-biom-format V 29 dir 4-414865.0.r487272/469048 K 12 py-biopython V 28 dir 4-31163.0.r487272/469705 K 12 py-bx-python V 29 dir 4-440232.0.r487272/470360 K 11 py-cutadapt V 27 dir 4-455154.0.r480173/1329 K 11 py-fastTSNE V 27 dir 4-487491.0.r487491/3326 K 11 py-gffutils V 27 dir 4-482400.0.r482400/2317 K 11 py-gtfparse V 29 dir 4-482398.0.r487272/471017 K 9 py-loompy V 29 dir 4-480236.0.r487272/471669 K 8 py-macs2 V 29 dir 4-455383.0.r487272/472321 K 25 py-orange3-bioinformatics V 29 dir 4-472358.0.r487272/472988 K 22 py-orange3-single-cell V 29 dir 4-476578.0.r487272/473668 K 10 py-pyfaidx V 27 dir 4-482399.0.r483221/1002 K 8 py-pysam V 27 dir 4-440231.0.r479938/1031 K 8 pycogent V 29 dir 4-236469.0.r487272/474333 K 7 pyfasta V 29 dir 4-244412.0.r487272/474989 K 12 python-nexus V 27 dir 4-246859.0.r480370/1012 K 7 rainbow V 27 dir 4-466235.0.r466235/3394 K 9 recombine V 27 dir 4-45886.0.r418767/75989 K 8 ruby-bio V 26 dir 4-49156.0.r440343/1070 K 11 rubygem-bio V 34 dir 4-236468.0-433348.r480295/1152 K 8 samtools V 27 dir 4-374767.0.r476246/1230 K 7 seaview V 25 dir 2-9150.0.r479235/2928 K 5 seqan V 27 dir 4-298619.0.r464043/3649 K 10 seqan-apps V 29 dir 4-414897.0.r487272/475695 K 6 seqan1 V 35 dir 4-298619.0-414898.r418767/76744 K 5 seqio V 25 dir 4-46640.0.r454906/710 K 5 seqtk V 27 dir 4-466379.0.r466379/3116 K 8 seqtools V 29 dir 5-333374.0.r487272/476438 K 4 sim4 V 25 dir 4-31064.0.r344539/879 K 7 slclust V 28 dir 4-411697.0.r460452/59392 K 13 smithwaterman V 27 dir 4-467402.0.r467402/4868 K 6 stacks V 29 dir 4-466048.0.r487272/477227 K 9 stringtie V 27 dir 4-474480.0.r474480/6007 K 11 tRNAscan-SE V 26 dir 4-56741.0.r480837/2100 K 8 t_coffee V 28 dir 4-53719.0.r487272/477915 K 7 tabixpp V 27 dir 4-467343.0.r467343/3875 K 10 treepuzzle V 28 dir 4-70552.0.r340722/506561 K 8 trimadap V 28 dir 4-466367.0.r473009/65007 K 11 trimmomatic V 28 dir 4-411261.0.r460452/60087 K 5 ugene V 28 dir 4-312798.0.r478818/11054 K 9 unanimity V 29 dir 4-468214.0.r487272/478612 K 6 vcflib V 28 dir 4-467553.0.r473010/48932 K 8 vcftools V 27 dir 4-409624.0.r476330/1075 K 6 velvet V 28 dir 4-243919.0.r458761/11452 K 4 wise V 28 dir 4-66053.0.r428152/155489 K 6 xmolwt V 27 dir 2-21329.0.r481888/73139 END ENDREP id: 1-9066.0.r487491/10474 type: dir pred: 1-9066.0.r487272/485743 count: 2427 text: 487491 3478 6983 0 e6f330a6864800ea1c50770c2c27414b cpath: /head/biology copyroot: 0 / PLAIN K 10 .arcconfig V 26 file 1-354154.0.r422906/41 K 14 .gitattributes V 26 file 1-411777.0.r467740/54 K 11 .gitauthors V 26 file 1-467739.0.r482212/80 K 10 .gitignore V 26 file 1-348322.0.r458023/77 K 11 .gitmessage V 27 file 3-457790.0.r457790/987 K 7 CHANGES V 28 file 1-99373.0.r484628/42333 K 15 CONTRIBUTING.md V 27 file 1-348323.0.r348323/344 K 9 COPYRIGHT V 26 file 1-146787.0.r470957/47 K 4 GIDs V 28 file 1-168311.0.r484648/1560 K 8 Keywords V 27 dir 1-314142.0.r419368/1305 K 5 LEGAL V 25 file 1-748.0.r481367/2626 K 5 MOVED V 27 file 1-69878.0.r487330/3110 K 8 Makefile V 21 file 1-6.0.r460340/56 K 2 Mk V 22 dir 1-5.0.r487455/7395 K 6 README V 24 file 1-2408.0.r469089/62 K 9 Templates V 26 dir 1-2932.0.r484628/45513 K 5 Tools V 26 dir 3-15302.0.r486557/4406 K 4 UIDs V 29 file 4-168311.0.r484537/46823 K 8 UPDATING V 27 file 1-102685.0.r487485/154 K 13 accessibility V 27 dir 1-42583.0.r487405/89479 K 6 arabic V 26 dir 1-38973.0.r485768/7916 K 9 archivers V 25 dir 1-242.0.r487412/13671 K 5 astro V 25 dir 1-301.0.r487420/17741 K 5 audio V 25 dir 1-148.0.r487411/48563 K 4 base V 28 dir 1-420954.0.r483807/92123 K 10 benchmarks V 23 dir 1-62.0.r487449/5607 K 7 biology V 26 dir 1-9066.0.r487491/10474 K 3 cad V 24 dir 1-276.0.r487419/6370 K 7 chinese V 27 dir 1-3770.0.r487272/536035 K 5 comms V 24 dir 1-76.0.r487319/11411 K 10 converters V 27 dir 1-1561.0.r487272/581500 K 9 databases V 25 dir 1-771.0.r487459/65236 K 9 deskutils V 27 dir 1-2098.0.r487405/280317 K 5 devel V 25 dir 1-73.0.r487487/351643 K 3 dns V 26 dir 1-6145.0.r487399/13559 K 7 editors V 24 dir 4-6.0.r487405/660415 K 9 emulators V 25 dir 1-181.0.r487472/10671 K 7 finance V 28 dir 1-4110.0.r487272/1688788 K 6 french V 29 dir 1-25673.0.r487272/1692974 K 3 ftp V 27 dir 1-199.0.r487272/1703830 K 5 games V 25 dir 1-104.0.r487474/62355 K 6 german V 28 dir 1-7451.0.r487272/1919451 K 8 graphics V 24 dir 1-94.0.r487466/62581 K 6 hebrew V 27 dir 3-31142.0.r485768/82269 K 9 hungarian V 28 dir 1p-38973.0.r485768/83764 K 3 irc V 26 dir 1-42.0.r487272/2166177 K 8 japanese V 26 dir 1-410.0.r487405/884650 K 4 java V 28 dir 1-2798.0.r487272/2196757 K 6 korean V 27 dir 1-5873.0.r486467/990520 K 4 lang V 24 dir 1-15.0.r487480/20327 K 4 mail V 24 dir 1-57.0.r487331/41986 K 4 math V 25 dir 1-162.0.r487490/48834 K 4 misc V 26 dir 7-35.0.r487405/1007198 K 10 multimedia V 25 dir d-333.0.r487481/26333 K 3 net V 26 dir 1-22.0.r487405/1168941 K 6 net-im V 28 dir 15-11144.0.r487488/12582 K 8 net-mgmt V 26 dir r-1011.0.r487448/23076 K 7 net-p2p V 29 dir g-29106.0.r487272/3086653 K 4 news V 27 dir 1-145.0.r487272/3091888 K 4 palm V 25 dir 1-6646.0.r487027/1561 K 6 polish V 30 dir tv-38973.0.r487272/3094537 K 10 ports-mgmt V 25 dir 1-5132.0.r487486/4856 K 10 portuguese V 28 dir 1-17842.0.r485768/165913 K 5 print V 24 dir 1-79.0.r487453/16315 K 7 russian V 27 dir 1-1559.0.r487220/358034 K 7 science V 28 dir n-5356.0.r487405/1235479 K 8 security V 25 dir 1-269.0.r487464/73854 K 6 shells V 25 dir w-6.0.r487272/3388884 K 8 sysutils V 25 dir b-339.0.r487489/77542 K 8 textproc V 26 dir 1-322.0.r487426/103285 K 9 ukrainian V 28 dir g-39704.0.r485768/170360 K 10 vietnamese V 27 dir 1-4812.0.r484482/170079 K 3 www V 26 dir 1-114.0.r487483/149688 K 3 x11 V 24 dir 1-16.0.r487479/30714 K 10 x11-clocks V 27 dir 1-931.0.r487405/1548350 K 11 x11-drivers V 27 dir 1-157567.0.r487351/4524 K 6 x11-fm V 27 dir 1-691.0.r487405/1552902 K 9 x11-fonts V 25 dir 1-543.0.r487471/12303 K 11 x11-servers V 25 dir 1n-710.0.r479663/2468 K 10 x11-themes V 29 dir 1-14410.0.r487272/4042710 K 12 x11-toolkits V 25 dir 1-120.0.r487317/20226 K 6 x11-wm V 26 dir 1-40.0.r487272/4117782 END ENDREP id: 2-1.0.r487491/14305 type: dir pred: 2-1.0.r487490/52662 count: 480577 text: 487491 10647 3645 0 23c8878d90fea369d9e3f45d6297aaf1 props: 458023 3927 157 0 4d85142843815bcc29c89469bccb873c cpath: /head copyroot: 0 / minfo-cnt: 1 PLAIN K 8 branches V 23 dir 0-1.0.r487476/19378 K 4 head V 23 dir 2-1.0.r487491/14305 K 8 projects V 24 dir 0-377393.0.r441387/0 K 8 svnadmin V 22 dir 3-1.0.r486555/1280 K 4 tags V 22 dir 8-1.0.r485630/5439 END ENDREP id: 0.0.r487491/14755 type: dir pred: 0.0.r487490/53112 count: 487491 text: 487491 14537 205 0 6f4dcd6a8bca63df53a8ebf09656ad2d props: 341041 7130 346 0 8b695b9f61597e4917effffba3bbfaa3 cpath: / copyroot: 0 / minfo-cnt: 47 3-9066.0.t487490-ag5f modify-file true false /head/biology/Makefile _4.0.t487490-ag5f add-dir false false /head/biology/py-fastTSNE _5.0.t487490-ag5f add-file true true /head/biology/py-fastTSNE/Makefile _8.0.t487490-ag5f add-file true true /head/biology/py-fastTSNE/distinfo _a.0.t487490-ag5f add-dir false false /head/biology/py-fastTSNE/files _b.0.t487490-ag5f add-file true true /head/biology/py-fastTSNE/files/patch-setup.py _e.0.t487490-ag5f add-file true true /head/biology/py-fastTSNE/pkg-descr 14755 14979