DELTA 500752 173 61 SVNB}R3dY*K|%p{ Jellyfish DISTVERSIONPREFIX= v DISTVERSION= 2.2.10 PORTREVISION= 5 CATEGORIES= LIB_DEPENDS= libhts.so:biology/htslibUSE_GITHUB= yes GNU_CONFIGURE= yes GH_ACCOUNT= gmarcais INSTALL_TARGET= install-strip PLIST_SUB= VER=${PORTVERSION} OPTIONS_DEFINE= NLS OPTIONS_SUB= yes NLS_USES= gettext NLS_CONFIGURE_ENABLE= nlsf ${CHOSEN_COMPILER_TYPE} == gcc CXXFLAGS+= -faligned-newENDREP DELTA 428954 115 207 SVN=?4 22557758001 SHA256 (gmarcais-Jellyfish-v2.2.10_GH0.tar.gz) = 49137356b1cdd014cb70e866f0739fc3fafea6421fa22cc64bcfeba55fc1dc27 SIZE (gmarcais-Jellyfish-v2.2.10_GH0.tar.gz) = 677009 ENDREP DELTA 411785 906 526 SVNX6.Z>5ng48-04-16 12:46:09class file_header : public generic_file_header { (publif(root_[name]["identity"].asBool()) @@ -56,7 +61,10 @@ class file_header : public generic_file_header { (publENDREP DELTA SVNY[YY--- include/jellyfish/hash_counter.hpp.orig 2018-04-16 12:46:09 UTC +++ include/jellyfish/hash_counter.hpp @@ -213,7 +213,7 @@ class hash_counter { (protected) new_ary_ = new array(ary_->size(), ary_->key_len(), ary_->val_len() + 1, ary_->max_reprobe(), ary_->reprobes()); } - } catch(typename array::ErrorAllocation e) { + } catch(typename array::ErrorAllocation &e) { new_ary_ = 0; } } ENDREP DELTA SVNtvtt--- sub_commands/count_main.cc.orig 2019-05-13 07:42:50 UTC +++ sub_commands/count_main.cc @@ -330,7 +330,7 @@ int count_main(int argc, char *argv[]) uint64_t max = args.upper_count_given ? args.upper_count_arg : std::numeric_limits::max(); try { merge_files(files, args.output_arg, header, min, max); - } catch(MergeError e) { + } catch(MergeError &e) { err::die(err::msg() << e.what()); } if(!args.no_unlink_flag) { ENDREP DELTA SVNMOMM--- sub_commands/merge_main.cc.orig 2019-05-13 07:46:43 UTC +++ sub_commands/merge_main.cc @@ -33,7 +33,7 @@ int merge_main(int argc, char *argv[]) try { merge_files(args.input_arg, args.output_arg, out_header, min, max); - } catch(MergeError e) { + } catch(MergeError &e) { 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