DELTA 507372 17284 22 SVNIpW@d }Dn0U bedtools DISTVERSIONPREFIX= v DISTVERSION= 2.29.0 CATEGORIES= TEST_DEPENDS= bash:shells/bashconfigure post-install: ${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/bedtools do-test: (cd ${WRKSRC}/test && bash test.sh)ENDREP DELTA 467783 422 205 SVN;;/--67891084 SHA256 (arq5x-bedtools2-v2.29.0_GH0.tar.gz) = 8a13b7ec93a2dc960616268d8009f6061bec5a32b8a38d5734f80e851bb8ed1e SIZE (arq5x-bedtools2-v2.29.0_GH0.tar.gz) = 20635364 ENDREP DELTA 472560 61 516 SVN'O]}%uPm;[9-09-07 21:14:5620,7 +20,7 @@ OBJ_DIR = obj BIN_DIR = bin SRC_DIR = src -CXX = g++ +CXX ?= g++ ifeq ($(DEBUG),1) BT_CPPFLAGS = -DDEBUG -D_DEBUG -D_FILE_OFFSET_BITS=64 -DWITH_HTS_CB_API $(INCLUDES) @@ -40,7 +40,7 @@ endif BT_LDFLAGS = BT_LIBS = -lz -lm -lbz2 -llzma -lpthread83,9 +183,9 @@ $(BIN_DIR)/intersectBed: | $(BIN_DIR)ENDREP DELTA SVNd9ddx^MO1쯘p0kaD <b6K[h[XE/^ @ Ҋ5ɹ{Uwm3,u5 Ӈ z}x^M $x^4i7)j,KsAf*+x3 *-8DV |.g$U '"q9E=NQ-{bB\*J0;%ƺf6 !DŽuT67P3cr~\t}PyڦT [[!%傾lK-ENDREP DELTA SVN>t>>x^}Rmk0<Æ&Mh &g5VpoBTT$5~'+ctHs/!`uV*3zF葿Tud|3#)xz{ws<|wXLfbGXe .ABD4򄦰ObUA"E9siqN['DQ٠q,L7T4Y e;e kY * DSWЙ2V\B p'ޏm:uc_Tf+%V7~Pе%OX(]3'E" Tig`Kce}c L׶E Hnm.x)KwnR@(~- ^[)jXXՂ1Ho/OymȅV5X/9N;<}qw' QgH5+_ENDREP id: 5-406676.0.r511958/1781 type: file pred: 5-406676.0.r507372/540158 count: 12 text: 511958 0 253 880 90b07136b16251ae2c7e2a4f834c045d 4684dc5a813c31c80a3bd915d304fde058761b4a 511957-az12/_4 props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/bedtools/Makefile copyroot: 0 / id: 8-406676.0.r511958/2084 type: file pred: 8-406676.0.r467783/1499 count: 2 text: 511958 282 193 187 3752e1f3fb466e28647b360ddc8343d1 9b8befc641b3f40e68a8e5e5697e31d6e7091af8 511957-az12/_5 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/bedtools/distinfo copyroot: 0 / id: b-406676.0.r511958/2387 type: file pred: b-406676.0.r472560/903 count: 3 text: 511958 503 382 975 6f4310a402085b66a5e2af7506aa20c3 e7dbfb6b8509386aaf55a9caf065c3294a2c629d 511957-az12/_7 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/bedtools/files/patch-Makefile copyroot: 0 / id: 8-511958.0.r511958/2701 type: file count: 0 text: 511958 912 328 612 91836ab24ea0c536ed67faee8752cdd0 194d7509239dd24c0073888f5c651c955b5d03de 511957-az12/_9 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/bedtools/files/patch-src_utils_Contexts_ContextBase.h copyroot: 0 / id: a-511958.0.r511958/3010 type: file count: 0 text: 511958 1253 515 830 f864730dba30c08710d95cd018f6bb1b cb7d5953c9558f89f57eb6c7f391e90c6e2c8b2b 511957-az12/_b props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/bedtools/files/patch-src_utils_htslib_Makefile copyroot: 0 / PLAIN K 14 patch-Makefile V 28 file b-406676.0.r511958/2387 K 38 patch-src_utils_Contexts_ContextBase.h V 28 file 8-511958.0.r511958/2701 K 31 patch-src_utils_htslib_Makefile V 28 file a-511958.0.r511958/3010 END ENDREP id: a-406676.0.r511958/3533 type: dir pred: a-406676.0.r472560/1287 count: 4 text: 511958 3313 207 0 201732d733298b37f07bf69ecbe06568 cpath: /head/biology/bedtools/files copyroot: 0 / PLAIN K 8 Makefile V 28 file 5-406676.0.r511958/1781 K 8 distinfo V 28 file 8-406676.0.r511958/2084 K 5 files V 27 dir a-406676.0.r511958/3533 K 9 pkg-descr V 28 file e-406676.0.r467783/2373 K 9 pkg-plist V 28 file g-406676.0.r467783/2677 END ENDREP id: 4-406676.0.r511958/3968 type: dir pred: 4-406676.0.r507372/540716 count: 12 text: 511958 3718 237 0 2355f5b2631dbe5e52de788e2eaeba09 cpath: /head/biology/bedtools copyroot: 0 / PLAIN K 8 Makefile V 26 file 3-9066.0.r506417/1166 K 5 abyss V 29 dir 4-493842.0.r509290/142462 K 7 artemis V 26 dir 4-51988.0.r472197/3128 K 5 avida V 28 dir 4-57919.0.r488341/241276 K 5 babel V 25 dir 2-9147.0.r395828/1878 K 8 bamtools V 29 dir 4-465808.0.r488341/242011 K 8 bcftools V 29 dir 4-388638.0.r508834/161320 K 8 bedtools V 27 dir 4-406676.0.r511958/3968 K 8 biococoa V 28 dir 4-181036.0.r492056/91571 K 8 bolt-lmm V 29 dir 4-502673.0.r509290/143202 K 6 bowtie V 29 dir 4-410180.0.r507372/542200 K 7 bowtie2 V 26 dir 4-411698.0.r499873/715 K 3 bwa V 28 dir 4-397851.0.r460452/50803 K 4 canu V 29 dir 4-456950.0.r509290/143940 K 6 cd-hit V 29 dir 4-397318.0.r507372/543674 K 8 cdbfasta V 28 dir 4-397850.0.r460452/52177 K 6 checkm V 27 dir 4-486814.0.r509260/1020 K 6 chemeq V 27 dir 5-153895.0.r508077/7159 K 13 clustal-omega V 27 dir 4-470582.0.r470582/3038 K 8 clustalw V 26 dir 2-30406.0.r470494/1388 K 6 consed V 29 dir 4-213590.0.r508834/162483 K 9 cufflinks V 29 dir 4-502661.0.r509290/144632 K 9 cytoscape V 27 dir 4-473806.0.r476967/1063 K 7 ddocent V 29 dir 4-467808.0.r507372/545063 K 7 diamond V 29 dir 4-414686.0.r508834/163186 K 7 dsr-pdb V 29 dir 4-491546.0.r509290/145375 K 6 emboss V 28 dir 4-31178.0.r508834/164447 K 9 exonerate V 27 dir 4-474558.0.r474558/2994 K 5 fasta V 28 dir 4-38205.0.r508834/165512 K 6 fasta3 V 28 dir 4-38207.0.r508834/166760 K 9 fastahack V 27 dir 4-467485.0.r467485/4193 K 9 fastdnaml V 28 dir 4-33727.0.r405891/192753 K 7 fastool V 28 dir 4-397849.0.r460452/52822 K 5 fastp V 29 dir 4-500737.0.r507372/546495 K 6 fastqc V 27 dir 4-455236.0.r455236/4852 K 8 fasttree V 29 dir 4-397848.0.r507372/547187 K 13 fastx-toolkit V 27 dir 4-397847.0.r470124/1637 K 7 figtree V 27 dir 4-492079.0.r492079/2487 K 9 fluctuate V 25 dir 4-45885.0.r401907/565 K 9 freebayes V 29 dir 4-467806.0.r507372/547889 K 6 garlic V 27 dir 4-85720.0.r464164/16579 K 4 gatk V 27 dir 4-486502.0.r507364/1769 K 5 gemma V 29 dir 4-501873.0.r507372/548628 K 6 gff2ps V 26 dir 4-51813.0.r487807/1016 K 4 gmap V 29 dir 4-174086.0.r508834/167507 K 9 gperiodic V 26 dir 2-21330.0.r509652/1164 K 8 graphlan V 27 dir 4-492071.0.r492071/3766 K 6 grappa V 28 dir 4-44738.0.r415498/235859 K 6 groopm V 29 dir 4-486812.0.r507372/549270 K 7 hhsuite V 26 dir 4-502015.0.r508177/856 K 6 hisat2 V 27 dir 4-489981.0.r489981/7797 K 5 hmmer V 28 dir 2-11871.0.r508834/168249 K 6 htslib V 27 dir 4-374729.0.r476245/1144 K 5 hyphy V 29 dir 4-469604.0.r507372/551480 K 3 igv V 27 dir 4-473356.0.r503255/1106 K 8 infernal V 26 dir 4-471850.0.r480834/606 K 5 iolib V 26 dir 4-240487.0.r497508/606 K 6 iqtree V 27 dir 4-452595.0.r509979/1020 K 7 jalview V 29 dir 4-155905.0.r415498/236602 K 9 jellyfish V 29 dir 4-411785.0.r507372/552869 K 8 kallisto V 29 dir 4-455382.0.r507372/553562 K 5 lagan V 29 dir 4-157464.0.r508834/169480 K 6 lamarc V 25 dir 4-45915.0.r477992/560 K 9 libbigwig V 27 dir 4-506417.0.r506417/2991 K 13 libgtextutils V 27 dir 4-397846.0.r465904/1530 K 7 libsbml V 27 dir 4-234730.0.r504890/1101 K 19 linux-foldingathome V 27 dir 4-171590.0.r508077/8549 K 5 mafft V 29 dir 4-157209.0.r415498/237345 K 5 mapm3 V 29 dir 4-210625.0.r415498/238094 K 7 migrate V 25 dir 4-45878.0.r464909/778 K 8 minimap2 V 27 dir 4-499895.0.r500860/1925 K 6 molden V 28 dir 2-18587.0.r507372/554252 K 5 mopac V 28 dir 2-18535.0.r507372/554944 K 6 mothur V 29 dir 4-502128.0.r507372/555587 K 7 mrbayes V 28 dir 4-203737.0.r498476/90047 K 6 mummer V 29 dir 4-203638.0.r507372/556326 K 6 muscle V 27 dir 4-213031.0.r425879/7950 K 11 ncbi-blast+ V 36 dir 4-370220.0-375848.r507372/557150 K 16 ncbi-cxx-toolkit V 29 dir 4-481520.0.r507372/557901 K 12 ncbi-toolkit V 28 dir 4-34402.0.r508834/170633 K 7 ngs-sdk V 27 dir 4-472158.0.r510395/2404 K 10 p5-AcePerl V 28 dir 4-31083.0.r481365/409824 K 22 p5-Bio-ASN1-EntrezGene V 27 dir 4-145476.0.r481714/1306 K 14 p5-Bio-Cluster V 27 dir 4-493444.0.r493444/2666 K 17 p5-Bio-Coordinate V 29 dir 4-428942.0.r481365/411271 K 10 p5-Bio-Das V 29 dir 4-141702.0.r481365/411991 K 15 p5-Bio-Das-Lite V 29 dir 4-250445.0.r481365/412708 K 16 p5-Bio-FeatureIO V 29 dir 4-449922.0.r481365/413425 K 11 p5-Bio-GFF3 V 29 dir 4-273031.0.r481365/414141 K 12 p5-Bio-Glite V 29 dir 4-231492.0.r481365/414857 K 15 p5-Bio-Graphics V 29 dir 4-229849.0.r481365/415573 K 14 p5-Bio-MAGETAB V 26 dir 4-236853.0.r499759/561 K 12 p5-Bio-NEXUS V 29 dir 4-240135.0.r481365/417012 K 12 p5-Bio-Phylo V 29 dir 4-162248.0.r481365/417723 K 10 p5-Bio-SCF V 26 dir 4-240489.0.r497239/733 K 10 p5-BioPerl V 33 dir 4-31084.0-428868.r511437/1671 K 14 p5-BioPerl-Run V 34 dir 4-161213.0-428872.r493448/3142 K 13 p5-TrimGalore V 27 dir 4-455857.0.r496785/2973 K 15 p5-transdecoder V 29 dir 4-411246.0.r507372/558619 K 4 paml V 26 dir 2-30407.0.r493971/1377 K 5 pbbam V 29 dir 4-468100.0.r509290/146115 K 8 pbcopper V 29 dir 4-468101.0.r509290/146856 K 7 pbseqan V 26 dir 4-467901.0.r493403/616 K 11 pear-merger V 28 dir 4-466449.0.r473009/64316 K 5 phrap V 29 dir 4-213596.0.r479406/209738 K 5 phred V 29 dir g-213596.0.r508834/171666 K 6 phylip V 26 dir 2-30408.0.r457755/1052 K 5 phyml V 27 dir 4-238140.0.r511777/1049 K 8 plinkseq V 28 dir g-304954.0.r460452/58702 K 7 primer3 V 26 dir 4-66513.0.r477995/1037 K 8 prodigal V 27 dir 4-492058.0.r492058/2687 K 11 prodigy-lig V 29 dir 4-492059.0.r507372/560765 K 8 protomol V 26 dir 4-161442.0.r477997/613 K 5 psi88 V 28 dir 2-18534.0.r507372/561459 K 16 py-Genesis-PyAPI V 29 dir 4-472277.0.r472884/413833 K 14 py-biom-format V 29 dir 4-414865.0.r507372/562113 K 12 py-biopython V 28 dir 4-31163.0.r507372/562768 K 12 py-bx-python V 29 dir 4-440232.0.r507372/563422 K 11 py-cutadapt V 27 dir 4-455154.0.r511957/1030 K 8 py-dnaio V 27 dir 4-496770.0.r496770/2107 K 11 py-fastTSNE V 29 dir 4-487491.0.r507372/564123 K 11 py-gffutils V 29 dir 4-482400.0.r498530/109407 K 11 py-gtfparse V 29 dir 4-482398.0.r507372/564782 K 9 py-loompy V 29 dir 4-480236.0.r507372/565436 K 8 py-macs2 V 29 dir 4-455383.0.r507372/566089 K 25 py-orange3-bioinformatics V 29 dir 4-472358.0.r507372/566759 K 22 py-orange3-single-cell V 29 dir 4-476578.0.r507372/567444 K 10 py-pyfaidx V 29 dir 4-482399.0.r498530/110058 K 8 py-pysam V 27 dir 4-440231.0.r510398/1033 K 13 py-xenaPython V 27 dir 4-498729.0.r498729/2362 K 8 pycogent V 29 dir 4-236469.0.r507372/568111 K 7 pyfasta V 29 dir 4-244412.0.r507372/568763 K 12 python-nexus V 27 dir 4-246859.0.r480370/1012 K 7 rainbow V 27 dir 4-466235.0.r466235/3394 K 9 recombine V 25 dir 4-45886.0.r510754/883 K 8 ruby-bio V 26 dir 4-49156.0.r440343/1070 K 11 rubygem-bio V 34 dir 4-236468.0-433348.r480295/1152 K 8 samtools V 29 dir 4-374767.0.r508834/172797 K 7 seaview V 25 dir 2-9150.0.r479235/2928 K 5 seqan V 27 dir 4-298619.0.r464043/3649 K 10 seqan-apps V 29 dir 4-414897.0.r509290/147561 K 6 seqan1 V 35 dir 4-298619.0-414898.r418767/76744 K 5 seqio V 25 dir 4-46640.0.r454906/710 K 5 seqtk V 27 dir 4-466379.0.r466379/3116 K 8 seqtools V 29 dir 5-333374.0.r507372/570209 K 4 sim4 V 25 dir 4-31064.0.r344539/879 K 7 slclust V 28 dir 4-411697.0.r460452/59392 K 13 smithwaterman V 27 dir 4-467402.0.r467402/4868 K 6 stacks V 29 dir 4-466048.0.r507372/570902 K 4 star V 29 dir 4-499592.0.r507372/571587 K 9 stringtie V 27 dir 4-474480.0.r474480/6007 K 11 tRNAscan-SE V 26 dir 4-56741.0.r503695/2002 K 8 t_coffee V 28 dir 4-53719.0.r507372/572272 K 7 tabixpp V 27 dir 4-467343.0.r467343/3875 K 7 treekin V 29 dir 4-504268.0.r507372/572919 K 10 treepuzzle V 28 dir 4-70552.0.r340722/506561 K 8 trimadap V 26 dir 4-466367.0.r501207/632 K 11 trimmomatic V 28 dir 4-411261.0.r460452/60087 K 5 ugene V 29 dir 4-312798.0.r490472/218523 K 9 unanimity V 29 dir 4-468214.0.r509290/148307 K 6 vcflib V 28 dir 4-467553.0.r473010/48932 K 8 vcftools V 27 dir 4-409624.0.r476330/1075 K 6 velvet V 28 dir 4-243919.0.r458761/11452 K 9 viennarna V 29 dir 4-505017.0.r507372/574403 K 7 vsearch V 27 dir 4-501147.0.r501259/1378 K 4 wise V 28 dir 4-66053.0.r508834/173892 END ENDREP id: 1-9066.0.r511958/12086 type: dir pred: 1-9066.0.r511957/9150 count: 2586 text: 511958 4150 7923 0 9e7736dabef98b9aa4d384c537fba8be cpath: /head/biology copyroot: 0 / PLAIN K 10 .arcconfig V 26 file 1-354154.0.r422906/41 K 14 .gitattributes V 26 file 1-411777.0.r467740/54 K 11 .gitauthors V 26 file 1-467739.0.r511771/77 K 10 .gitignore V 26 file 1-348322.0.r458023/77 K 11 .gitmessage V 27 file 3-457790.0.r457790/987 K 7 CHANGES V 26 file 1-99373.0.r494236/359 K 15 CONTRIBUTING.md V 27 file 1-348323.0.r348323/344 K 9 COPYRIGHT V 27 file 1-146787.0.r488856/403 K 4 GIDs V 28 file 1-168311.0.r510043/2032 K 8 Keywords V 27 dir 1-314142.0.r509900/1268 K 5 LEGAL V 24 file 1-748.0.r510697/947 K 5 MOVED V 26 file 1-69878.0.r511810/383 K 8 Makefile V 21 file 1-6.0.r511095/59 K 2 Mk V 23 dir 1-5.0.r511900/11560 K 6 README V 25 file 1-2408.0.r494236/641 K 9 Templates V 24 dir 1-2932.0.r510716/810 K 5 Tools V 26 dir 3-15302.0.r511955/3397 K 4 UIDs V 28 file 4-168311.0.r510043/2314 K 8 UPDATING V 28 file 1-102685.0.r511830/2782 K 13 accessibility V 27 dir 1-42583.0.r511772/22716 K 6 arabic V 27 dir 1-38973.0.r511270/50785 K 9 archivers V 25 dir 1-242.0.r511946/13853 K 5 astro V 24 dir 1-301.0.r511947/7847 K 5 audio V 25 dir 1-148.0.r511924/46530 K 4 base V 26 dir 1-420954.0.r495519/960 K 10 benchmarks V 23 dir 1-62.0.r511264/9415 K 7 biology V 26 dir 1-9066.0.r511958/12086 K 3 cad V 24 dir 1-276.0.r511747/6356 K 7 chinese V 25 dir 1-3770.0.r511889/6267 K 5 comms V 24 dir 1-76.0.r511906/11431 K 10 converters V 26 dir 1-1561.0.r511635/10915 K 9 databases V 25 dir 1-771.0.r511914/60640 K 9 deskutils V 26 dir 1-2098.0.r511632/16552 K 5 devel V 25 dir 1-73.0.r511951/361022 K 3 dns V 26 dir 1-6145.0.r511837/12956 K 7 editors V 23 dir 4-6.0.r511655/14085 K 9 emulators V 25 dir 1-181.0.r511875/10014 K 7 finance V 26 dir 1-4110.0.r511752/14846 K 6 french V 27 dir 1-25673.0.r511327/11470 K 3 ftp V 24 dir 1-199.0.r511887/6030 K 5 games V 25 dir 1-104.0.r511863/57157 K 6 german V 25 dir 1-7451.0.r511688/2457 K 8 graphics V 24 dir 1-94.0.r511954/61394 K 6 hebrew V 28 dir 3-31142.0.r511270/141564 K 9 hungarian V 29 dir 1p-38973.0.r511270/142930 K 3 irc V 25 dir 1-42.0.r511180/503889 K 8 japanese V 25 dir 1-410.0.r511695/16607 K 4 java V 26 dir 1-2798.0.r511553/10082 K 6 korean V 27 dir 1-5873.0.r511270/161446 K 4 lang V 24 dir 1-15.0.r511848/19875 K 4 mail V 24 dir 1-57.0.r511919/41541 K 4 math V 25 dir 1-162.0.r511766/47800 K 4 misc V 24 dir 7-35.0.r511918/29109 K 10 multimedia V 25 dir d-333.0.r511956/25429 K 3 net V 24 dir 1-22.0.r511953/82585 K 6 net-im V 28 dir 15-11144.0.r511637/10924 K 8 net-mgmt V 26 dir r-1011.0.r511901/23350 K 7 net-p2p V 27 dir g-29106.0.r511956/30998 K 4 news V 26 dir 1-145.0.r508903/520626 K 4 palm V 25 dir 1-6646.0.r509568/1184 K 6 polish V 27 dir tv-38973.0.r511689/2053 K 10 ports-mgmt V 25 dir 1-5132.0.r511923/5040 K 10 portuguese V 28 dir 1-17842.0.r511270/165221 K 5 print V 24 dir 1-79.0.r511922/21015 K 7 russian V 25 dir 1-1559.0.r511413/2843 K 7 science V 26 dir n-5356.0.r511891/19102 K 8 security V 25 dir 1-269.0.r511915/76610 K 6 shells V 22 dir w-6.0.r511894/4536 K 8 sysutils V 25 dir b-339.0.r511911/81614 K 8 textproc V 26 dir 1-322.0.r511950/101872 K 9 ukrainian V 28 dir g-39704.0.r511270/169296 K 10 vietnamese V 25 dir 1-4812.0.r511321/2882 K 3 www V 26 dir 1-114.0.r511913/147407 K 3 x11 V 24 dir 1-16.0.r511954/88652 K 10 x11-clocks V 27 dir 1-931.0.r511258/1391925 K 11 x11-drivers V 27 dir 1-157567.0.r511351/7640 K 6 x11-fm V 25 dir 1-691.0.r511954/91441 K 9 x11-fonts V 25 dir 1-543.0.r511917/15903 K 11 x11-servers V 27 dir 1n-710.0.r508914/149584 K 10 x11-themes V 27 dir 1-14410.0.r511921/11112 K 12 x11-toolkits V 26 dir 1-120.0.r511772/127140 K 6 x11-wm V 23 dir 1-40.0.r511823/7811 END ENDREP id: 2-1.0.r511958/15870 type: dir pred: 2-1.0.r511957/12932 count: 503838 text: 511958 12257 3600 0 d2f69c215f9b6428d568f8d1a44745ab props: 458023 3927 157 0 4d85142843815bcc29c89469bccb873c cpath: /head copyroot: 0 / PLAIN K 8 branches V 24 dir 0-1.0.r511871/152608 K 4 head V 23 dir 2-1.0.r511958/15870 K 8 projects V 24 dir 0-377393.0.r441387/0 K 8 svnadmin V 22 dir 3-1.0.r510842/1281 K 4 tags V 22 dir 8-1.0.r504509/5491 END ENDREP id: 0.0.r511958/16308 type: dir pred: 0.0.r511957/13369 count: 511958 text: 511958 16089 206 0 dde63772cc5ffbe6e571c1e51b5d28ba props: 341041 7130 346 0 8b695b9f61597e4917effffba3bbfaa3 cpath: / copyroot: 0 / minfo-cnt: 53 5-406676.0.t511957-az12 modify-file true false /head/biology/bedtools/Makefile 8-406676.0.t511957-az12 modify-file true false /head/biology/bedtools/distinfo b-406676.0.t511957-az12 modify-file true false /head/biology/bedtools/files/patch-Makefile _8.0.t511957-az12 add-file true true /head/biology/bedtools/files/patch-src_utils_Contexts_ContextBase.h _a.0.t511957-az12 add-file true true /head/biology/bedtools/files/patch-src_utils_htslib_Makefile 16308 16532