DELTA 506417 0 29 SVNf~ U!EaplohseqENDREP DELTA SVNn.nnx^uQ[k0~~`lK5MN%,PRg߰d\MZ5Oo=ؓ7i]dH+t}+tRhE|Jp{IG6|tFB *RHU)ˡ&tKRX4oEL$G)J)c s6ب? _U?::Ww-j#RVlNl %3]sk̲.Fxl*my,PI_"#.cr+f#x6ʷuNG I&ݝ/= ˌ!C-OigmoƎENDREP DELTA SVN(*((TIMESTAMP = 1567118170 SHA256 (haplohseq_source-0.1.2.zip) = 35f8fe6718020e6eacdc309d28fc5dd3cc7c6e8400da1d962fdf6fb52d4e90c5 SIZE (haplohseq_source-0.1.2.zip) = 63620 ENDREP DELTA SVNWJWWx^XmsF۱3 'Ô6ıZ2#āH:ЛqƄ1pw{>4Mtb_lv^f5wۭ}aNrxzW&/cN$1{wAmӹ$?ITt}9BIb`. ȄG"iXcO lKi<%Q:S HD3U厤EPpaˑN!4vڂ,h*V6,e%hq"1JˉS:C,avX@)̱X?4t)Պ]"dUcsh),Onښ+:upYc9| i@E>{a0UɳO&~0S-ӭҷuF^Gp@hNl;5|70$H8{P6&y|q1ẁ!1!'{.1{ b[40Wev;;5:Gÿ'GS4䚡2VRB0sp{󥚺&qp갉 pT 8K8Y}!>2%cq0qv;1.oNO ?)b`eNX.zPm $Xď$jjf+QnXK" . +ĞkAH6՛lA/^4Z{Wera9q:@`RcG0,7]z2؃2SS3V<~fS.:tb"#+r!N6| (l|ω zM m q\rK;}G:#DT3GzW(Uwsj#K\*}HՈҒK0ΫN5XQAx>7Uw'J Mq[e1\Oz). .iJۺZ 1nZ=;yPoh]+ף?w$阡nq|\9dj9Р yc\Bf C^.eEU'16љK\I~+lXJ^oR2mtCDng3$QdIer|%/U XXJ xKJ?skjYCC6o#b-E 0˗lwXo6`-_Vح}֪ޏ.[j[q ի7aS&P!?\{VT#j3ENDREP DELTA SVNEQEEx^QMO0 =§%֕! 6V]k%Ƈd ć )g?y/cЊyj]4]TҤ'?G'0OH'$` ^(U<ϗ|xj,; =kxɷnS)zZQ= 8dhd[ݤ =sKUX PVjQJ^ e BxZ 3F0NAa˶j3'?V[0lɌUW/>:y3zLϻt+^dQi]a R6ý4ٹ_@fENDREP DELTA SVN`b``--- src/test/InputProcessorTest.cpp.orig 2019-09-01 12:33:22 UTC +++ src/test/InputProcessorTest.cpp @@ -82,7 +82,7 @@ BOOST_AUTO_TEST_CASE(isHetTest) { BOOST_REQUIRE_EQUAL(inputProc.isHet('A','?'), false); BOOST_REQUIRE_EQUAL(inputProc.isHet('A','.'), false); BOOST_REQUIRE_EQUAL(inputProc.isHet('A',' '), false); - BOOST_REQUIRE_EQUAL(inputProc.isHet('C', NULL), true); + BOOST_REQUIRE_EQUAL(inputProc.isHet('C','\0'), true); } BOOST_AUTO_TEST_CASE(readAllelesTest) { ENDREP DELTA SVN`b``#!/bin/sh -e printf "\n=== FreqPhaseTest ===\n\n" ./FreqPhaseTest printf "\n=== InputProcessorTest ===\n\n" ./InputProcessorTest printf "\n=== HmmTest ===\n\n" ./HmmTest printf "\n=== HaplohSeqTest ===\n\n" ./HaplohSeqTest ENDREP DELTA SVN^`^^Haplohseq identifies regions of allelic imbalance (AI) in sequencing data obtained from impure samples where AI events exist in a potentially low proportion of cells in the sample. Input to the software includes a VCF file of genotypes and estimated phased genotypes. 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