DELTA 528753 0 21 SVNxx.I/8ENDREP DELTA 528753 46 174 SVN**5349961 SHA256 (veg-hyphy-2.5.8_GH0.tar.gz) = df528ba5cd86071017a005ae9a7cd76f8d35b7270e62840ae5fc4231092ac9b8 SIZE (veg-hyphy-2.5.8_GH0.tar.gz) = 6093096 ENDREP DELTA 528590 248 24 SVN0D<!k2/PRIPROPERTIESTemplateBatchFiles/simpleBootstrapENDREP id: 5-469604.0.r529331/362 type: file pred: 5-469604.0.r528753/247 count: 11 text: 529331 0 21 376 1b132ed94e37da17b4cf4323bc6e06cc 057546c692c97230cce305b31734045b233ec138 529330-bcfn/_4 props: 300914 71 103 0 bb58aa814bbdf5f7c1ab04a05656f5a5 cpath: /head/biology/hyphy/Makefile copyroot: 0 / id: 8-469604.0.r529331/657 type: file pred: 8-469604.0.r528753/542 count: 8 text: 529331 46 175 170 b38b2256d4614e1859e3fabbc76cf701 eb9a82610d6e574dff91c8d7913dd00a9966f997 529330-bcfn/_5 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/hyphy/distinfo copyroot: 0 / id: i-469604.0.r529331/954 type: file pred: i-469604.0.r528590/891 count: 5 text: 529331 248 87 23450 0f531384ba505eda3e793c568f4b78c0 fe61dc919557242a65794132ae9fd2599a0bbcc7 529330-bcfn/_6 props: 300936 2259 98 0 8dda59e103a981389badbb35c2ee62ce cpath: /head/biology/hyphy/pkg-plist copyroot: 0 / PLAIN K 8 Makefile V 27 file 5-469604.0.r529331/362 K 8 distinfo V 27 file 8-469604.0.r529331/657 K 9 pkg-descr V 28 file g-469604.0.r469604/8137 K 9 pkg-plist V 27 file i-469604.0.r529331/954 END ENDREP id: 4-469604.0.r529331/1458 type: dir pred: 4-469604.0.r528753/1043 count: 11 text: 529331 1254 191 0 51daff6938de470d74e0462cdc498b8d cpath: /head/biology/hyphy copyroot: 0 / PLAIN K 8 Makefile V 26 file 3-9066.0.r528886/5367 K 5 abyss V 28 dir 4-493842.0.r528082/12073 K 7 artemis V 28 dir 4-51988.0.r518482/119475 K 5 avida V 25 dir 4-57919.0.r515272/569 K 5 babel V 25 dir 2-9147.0.r395828/1878 K 8 bamtools V 27 dir 4-465808.0.r522975/2759 K 8 bcftools V 28 dir 4-388638.0.r515671/64706 K 8 bedtools V 27 dir 4-406676.0.r520414/1111 K 8 biococoa V 28 dir 4-181036.0.r527847/46635 K 8 bolt-lmm V 28 dir 4-502673.0.r524642/10050 K 6 bowtie V 29 dir 4-410180.0.r507372/542200 K 7 bowtie2 V 27 dir 4-411698.0.r527560/2066 K 3 bwa V 28 dir 4-397851.0.r460452/50803 K 4 canu V 27 dir 4-456950.0.r528792/1451 K 6 cd-hit V 29 dir 4-397318.0.r507372/543674 K 8 cdbfasta V 28 dir 4-397850.0.r460452/52177 K 6 checkm V 27 dir 4-486814.0.r509260/1020 K 13 clustal-omega V 27 dir 4-470582.0.r470582/3038 K 8 clustalw V 26 dir 2-30406.0.r470494/1388 K 6 consed V 29 dir 4-213590.0.r516880/105067 K 9 cufflinks V 29 dir 4-502661.0.r519824/212949 K 9 cytoscape V 29 dir 4-473806.0.r518482/120121 K 7 ddocent V 29 dir 4-467808.0.r507372/545063 K 7 diamond V 27 dir 4-414686.0.r528881/1078 K 7 dsr-pdb V 29 dir 4-491546.0.r519824/213694 K 6 emboss V 27 dir 4-31178.0.r517008/55394 K 9 exonerate V 27 dir 4-474558.0.r474558/2994 K 5 fasta V 28 dir 4-38205.0.r508834/165512 K 6 fasta3 V 28 dir 4-38207.0.r508834/166760 K 9 fastahack V 27 dir 4-467485.0.r513910/1178 K 9 fastdnaml V 28 dir 4-33727.0.r405891/192753 K 7 fastool V 28 dir 4-397849.0.r460452/52822 K 5 fastp V 29 dir 4-500737.0.r507372/546495 K 6 fastqc V 27 dir 4-455236.0.r512461/1529 K 8 fasttree V 29 dir 4-397848.0.r507372/547187 K 13 fastx-toolkit V 27 dir 4-397847.0.r470124/1637 K 7 figtree V 27 dir 4-492079.0.r492079/2487 K 9 fluctuate V 25 dir 4-45885.0.r401907/565 K 9 freebayes V 29 dir 4-467806.0.r507372/547889 K 6 garlic V 26 dir 4-85720.0.r516742/8029 K 4 gatk V 27 dir 4-486502.0.r527743/2371 K 5 gemma V 28 dir 4-501873.0.r524642/10782 K 6 gff2ps V 26 dir 4-51813.0.r487807/1016 K 4 gmap V 29 dir 4-174086.0.r508834/167507 K 9 gperiodic V 25 dir 2-21330.0.r523524/954 K 8 graphlan V 29 dir 4-492071.0.r526925/102949 K 6 grappa V 28 dir 4-44738.0.r415498/235859 K 6 groopm V 29 dir 4-486812.0.r526925/103597 K 9 haplohseq V 28 dir 4-512137.0.r528058/82849 K 7 hhsuite V 28 dir 4-502015.0.r528082/12804 K 6 hisat2 V 27 dir 4-489981.0.r489981/7797 K 5 hmmer V 26 dir 2-11871.0.r524533/2834 K 6 htslib V 27 dir 4-374729.0.r476245/1144 K 5 hyphy V 27 dir 4-469604.0.r529331/1458 K 3 igv V 27 dir 4-473356.0.r528706/2827 K 8 infernal V 27 dir 4-471850.0.r524268/3408 K 5 iolib V 26 dir 4-240487.0.r497508/606 K 6 iqtree V 27 dir 4-452595.0.r509979/1020 K 7 jalview V 29 dir 4-155905.0.r518482/121500 K 9 jellyfish V 27 dir 4-411785.0.r527971/2756 K 8 kallisto V 27 dir 4-455382.0.r526244/1338 K 5 lagan V 29 dir 4-157464.0.r508834/169480 K 6 lamarc V 25 dir 4-45915.0.r477992/560 K 9 libbigwig V 27 dir 4-506417.0.r506417/2991 K 13 libgtextutils V 27 dir 4-397846.0.r465904/1530 K 7 libsbml V 26 dir 4-234730.0.r525568/551 K 19 linux-foldingathome V 34 dir 4-171590.0-528886.r528977/1518 K 5 mafft V 29 dir 4-157209.0.r415498/237345 K 5 mapm3 V 29 dir 4-210625.0.r415498/238094 K 7 migrate V 25 dir 4-45878.0.r464909/778 K 8 minimap2 V 27 dir 4-499895.0.r500860/1925 K 6 molden V 26 dir 2-18587.0.r516742/8708 K 5 mopac V 28 dir 2-18535.0.r507372/554944 K 6 mothur V 27 dir 4-502128.0.r513838/1037 K 7 mrbayes V 27 dir 4-203737.0.r527483/2985 K 6 mummer V 29 dir 4-203638.0.r507372/556326 K 6 muscle V 26 dir 4-213031.0.r523339/631 K 11 ncbi-blast+ V 34 dir 4-370220.0-375848.r520932/3850 K 16 ncbi-cxx-toolkit V 27 dir 4-481520.0.r516742/9401 K 12 ncbi-toolkit V 25 dir 4-34402.0.r513114/679 K 7 ngs-sdk V 27 dir 4-472158.0.r527973/1441 K 10 p5-AcePerl V 28 dir 4-31083.0.r481365/409824 K 22 p5-Bio-ASN1-EntrezGene V 26 dir 4-145476.0.r522439/608 K 14 p5-Bio-Cluster V 26 dir 4-493444.0.r519355/672 K 17 p5-Bio-Coordinate V 29 dir 4-428942.0.r481365/411271 K 14 p5-Bio-DB-EMBL V 27 dir 4-519318.0.r519318/2891 K 20 p5-Bio-DB-NCBIHelper V 27 dir 4-519319.0.r519319/3064 K 10 p5-Bio-Das V 29 dir 4-141702.0.r481365/411991 K 15 p5-Bio-Das-Lite V 29 dir 4-250445.0.r481365/412708 K 16 p5-Bio-FeatureIO V 29 dir 4-449922.0.r481365/413425 K 11 p5-Bio-GFF3 V 29 dir 4-273031.0.r481365/414141 K 12 p5-Bio-Glite V 29 dir 4-231492.0.r481365/414857 K 15 p5-Bio-Graphics V 29 dir 4-229849.0.r481365/415573 K 14 p5-Bio-MAGETAB V 26 dir 4-236853.0.r499759/561 K 12 p5-Bio-NEXUS V 29 dir 4-240135.0.r481365/417012 K 12 p5-Bio-Phylo V 29 dir 4-162248.0.r481365/417723 K 10 p5-Bio-SCF V 26 dir 4-240489.0.r497239/733 K 16 p5-Bio-Variation V 27 dir 4-519320.0.r522440/1435 K 10 p5-BioPerl V 33 dir 4-31084.0-428868.r519356/1638 K 14 p5-BioPerl-Run V 33 dir 4-161213.0-428872.r522441/675 K 13 p5-TrimGalore V 27 dir 4-455857.0.r518469/1133 K 15 p5-transdecoder V 29 dir 4-411246.0.r507372/558619 K 4 paml V 26 dir 2-30407.0.r518150/1021 K 5 pbbam V 29 dir 4-468100.0.r519824/215175 K 8 pbcopper V 26 dir 4-468101.0.r528170/622 K 7 pbseqan V 27 dir 4-467901.0.r518334/2673 K 11 pear-merger V 28 dir 4-466449.0.r473009/64316 K 5 phrap V 29 dir 4-213596.0.r479406/209738 K 5 phred V 29 dir g-213596.0.r508834/171666 K 6 phylip V 27 dir 2-30408.0.r516742/10091 K 5 phyml V 26 dir 4-238140.0.r519139/528 K 8 plinkseq V 29 dir g-304954.0.r516880/107190 K 7 primer3 V 26 dir 4-66513.0.r477995/1037 K 8 prodigal V 26 dir 4-492058.0.r514336/587 K 11 prodigy-lig V 29 dir 4-492059.0.r507372/560765 K 8 protomol V 28 dir 4-161442.0.r516742/10826 K 5 psi88 V 28 dir 2-18534.0.r507372/561459 K 16 py-Genesis-PyAPI V 29 dir 4-472277.0.r472884/413833 K 14 py-biom-format V 29 dir 4-414865.0.r526925/104249 K 12 py-biopython V 28 dir 4-31163.0.r507372/562768 K 12 py-bx-python V 27 dir 4-440232.0.r526239/1171 K 11 py-cutadapt V 27 dir 4-455154.0.r518242/1118 K 8 py-dnaio V 27 dir 4-496770.0.r518240/1092 K 11 py-fastTSNE V 28 dir 4-487491.0.r528082/13494 K 11 py-gffutils V 27 dir 4-482400.0.r521594/1114 K 11 py-gtfparse V 29 dir 4-482398.0.r507372/564782 K 9 py-loompy V 29 dir 4-480236.0.r507372/565436 K 8 py-macs2 V 26 dir 4-455383.0.r525659/513 K 10 py-multiqc V 27 dir 4-512646.0.r518470/2047 K 25 py-orange3-bioinformatics V 29 dir 4-472358.0.r507372/566759 K 22 py-orange3-single-cell V 29 dir 4-476578.0.r507372/567444 K 10 py-pyfaidx V 29 dir 4-482399.0.r498530/110058 K 8 py-pysam V 27 dir 4-440231.0.r523862/1033 K 13 py-xenaPython V 27 dir 4-498729.0.r498729/2362 K 7 pyfasta V 29 dir 4-244412.0.r507372/568763 K 12 python-nexus V 27 dir 4-246859.0.r480370/1012 K 7 rainbow V 27 dir 4-466235.0.r466235/3394 K 9 recombine V 25 dir 4-45886.0.r510754/883 K 8 ruby-bio V 26 dir 4-49156.0.r440343/1070 K 11 rubygem-bio V 34 dir 4-236468.0-433348.r480295/1152 K 8 samtools V 29 dir 4-374767.0.r508834/172797 K 7 seaview V 25 dir 2-9150.0.r528926/1025 K 5 seqan V 27 dir 4-298619.0.r464043/3649 K 10 seqan-apps V 29 dir 4-414897.0.r519824/216618 K 6 seqan1 V 35 dir 4-298619.0-414898.r512232/50385 K 5 seqio V 25 dir 4-46640.0.r454906/710 K 5 seqtk V 27 dir 4-466379.0.r466379/3116 K 8 seqtools V 29 dir 5-333374.0.r516880/107932 K 4 sim4 V 25 dir 4-31064.0.r344539/879 K 7 slclust V 28 dir 4-411697.0.r460452/59392 K 13 smithwaterman V 27 dir 4-467402.0.r467402/4868 K 6 stacks V 29 dir 4-466048.0.r507372/570902 K 4 star V 27 dir 4-499592.0.r513915/1094 K 9 stringtie V 26 dir 4-474480.0.r526916/566 K 11 tRNAscan-SE V 26 dir 4-56741.0.r522898/1202 K 8 t_coffee V 28 dir 4-53719.0.r516880/108624 K 7 tabixpp V 27 dir 4-467343.0.r467343/3875 K 6 tophat V 28 dir 4-512997.0.r528058/83586 K 7 treekin V 28 dir 4-504268.0.r524642/11423 K 10 treepuzzle V 28 dir 4-70552.0.r340722/506561 K 8 trimadap V 26 dir 4-466367.0.r501207/632 K 11 trimmomatic V 29 dir 4-411261.0.r518482/122242 K 5 ugene V 29 dir 4-312798.0.r516880/109370 K 6 vcflib V 28 dir 4-467553.0.r473010/48932 K 8 vcftools V 27 dir 4-409624.0.r476330/1075 K 6 velvet V 28 dir 4-243919.0.r458761/11452 K 9 viennarna V 27 dir 4-505017.0.r522200/1499 K 7 vsearch V 27 dir 4-501147.0.r526534/1085 K 4 wise V 28 dir 4-66053.0.r517040/177781 END ENDREP id: 1-9066.0.r529331/9702 type: dir pred: 1-9066.0.r528977/9827 count: 2700 text: 529331 1635 8054 0 8f52094a38f819be34b02e1c03e6f318 cpath: /head/biology copyroot: 0 / PLAIN K 10 .arcconfig V 26 file 1-354154.0.r422906/41 K 14 .gitattributes V 26 file 1-411777.0.r467740/54 K 11 .gitauthors V 26 file 1-467739.0.r528708/88 K 10 .gitignore V 26 file 1-348322.0.r458023/77 K 11 .gitmessage V 27 file 3-457790.0.r457790/987 K 7 CHANGES V 26 file 1-99373.0.r523105/362 K 15 CONTRIBUTING.md V 27 file 1-348323.0.r348323/344 K 9 COPYRIGHT V 26 file 1-146787.0.r521639/51 K 4 GIDs V 29 file 1-168311.0.r529174/42330 K 8 Keywords V 27 dir 1-314142.0.r509900/1268 K 5 LEGAL V 25 file 1-748.0.r528886/4517 K 5 MOVED V 28 file 1-69878.0.r529212/10404 K 8 Makefile V 23 file 1-6.0.r516635/2409 K 2 Mk V 22 dir 1-5.0.r529061/7754 K 6 README V 25 file 1-2408.0.r494236/641 K 9 Templates V 25 dir 1-2932.0.r523104/4369 K 5 Tools V 26 dir 3-15302.0.r522779/3115 K 4 UIDs V 29 file 4-168311.0.r529174/42612 K 8 UPDATING V 29 file 1-102685.0.r529174/42895 K 13 accessibility V 26 dir 1-42583.0.r528433/3008 K 6 arabic V 27 dir 1-38973.0.r520009/50387 K 9 archivers V 25 dir 1-242.0.r529236/20084 K 5 astro V 25 dir 1-301.0.r529063/14276 K 5 audio V 25 dir 1-148.0.r529277/44744 K 4 base V 26 dir 1-420954.0.r521962/779 K 10 benchmarks V 23 dir 1-62.0.r529310/9109 K 7 biology V 25 dir 1-9066.0.r529331/9702 K 3 cad V 24 dir 1-276.0.r529305/7036 K 7 chinese V 27 dir 1-3770.0.r528058/104383 K 5 comms V 24 dir 1-76.0.r529224/11390 K 10 converters V 26 dir 1-1561.0.r528853/16273 K 9 databases V 25 dir 1-771.0.r529330/60386 K 9 deskutils V 26 dir 1-2098.0.r529327/77134 K 5 devel V 25 dir 1-73.0.r529327/451756 K 3 dns V 27 dir 1-6145.0.r529327/464988 K 7 editors V 23 dir 4-6.0.r529185/14546 K 9 emulators V 26 dir 1-181.0.r529327/474339 K 7 finance V 27 dir 1-4110.0.r528829/530051 K 6 french V 28 dir 1-25673.0.r527561/516822 K 3 ftp V 24 dir 1-199.0.r528720/5547 K 5 games V 25 dir 1-104.0.r529270/54938 K 6 german V 27 dir 1-7451.0.r528706/444856 K 8 graphics V 24 dir 1-94.0.r529329/60974 K 6 hebrew V 28 dir 3-31142.0.r520009/142140 K 9 hungarian V 29 dir 1p-38973.0.r520009/143509 K 3 irc V 23 dir 1-42.0.r528973/6789 K 8 japanese V 25 dir 1-410.0.r528204/17296 K 4 java V 25 dir 1-2798.0.r528938/9931 K 6 korean V 27 dir 1-5873.0.r527561/652471 K 4 lang V 24 dir 1-15.0.r529278/19411 K 4 mail V 25 dir 1-57.0.r529310/423010 K 4 math V 26 dir 1-162.0.r529327/583060 K 4 misc V 24 dir 7-35.0.r529307/28208 K 10 multimedia V 26 dir d-333.0.r529327/607993 K 3 net V 25 dir 1-22.0.r529327/691353 K 6 net-im V 28 dir 15-11144.0.r529301/11097 K 8 net-mgmt V 26 dir r-1011.0.r529226/24346 K 7 net-p2p V 26 dir g-29106.0.r529151/6515 K 4 news V 24 dir 1-145.0.r528936/5349 K 6 polish V 29 dir tv-38973.0.r528829/754104 K 10 ports-mgmt V 25 dir 1-5132.0.r529309/4917 K 10 portuguese V 28 dir 1-17842.0.r527561/792047 K 5 print V 24 dir 1-79.0.r529202/14126 K 7 russian V 27 dir 1-1559.0.r527858/659405 K 7 science V 26 dir n-5356.0.r529306/18046 K 8 security V 26 dir 1-269.0.r529327/760545 K 6 shells V 22 dir w-6.0.r528759/4076 K 8 sysutils V 26 dir b-339.0.r529327/839709 K 8 textproc V 26 dir 1-322.0.r529327/941788 K 9 ukrainian V 28 dir g-39704.0.r520009/169623 K 10 vietnamese V 27 dir 1-4812.0.r520009/171322 K 3 www V 27 dir 1-114.0.r529327/1084230 K 3 x11 V 26 dir 1-16.0.r529327/1110803 K 10 x11-clocks V 24 dir 1-931.0.r529326/2977 K 11 x11-drivers V 27 dir 1-157567.0.r529076/4299 K 6 x11-fm V 24 dir 1-691.0.r529127/2758 K 9 x11-fonts V 25 dir 1-543.0.r529238/14356 K 11 x11-servers V 25 dir 1n-710.0.r528751/1941 K 10 x11-themes V 27 dir 1-14410.0.r529262/10648 K 12 x11-toolkits V 25 dir 1-120.0.r529292/13973 K 6 x11-wm V 23 dir 1-40.0.r529286/7726 END ENDREP id: 2-1.0.r529331/13461 type: dir pred: 2-1.0.r529330/64149 count: 520424 text: 529331 9872 3576 0 e53880f0d42d18c7e9f49fe66de987ad props: 458023 3927 157 0 4d85142843815bcc29c89469bccb873c cpath: /head copyroot: 0 / PLAIN K 8 branches V 23 dir 0-1.0.r529300/18204 K 4 head V 23 dir 2-1.0.r529331/13461 K 8 projects V 24 dir 0-377393.0.r441387/0 K 8 svnadmin V 22 dir 3-1.0.r528688/1495 K 4 tags V 22 dir 8-1.0.r514565/5542 END ENDREP id: 0.0.r529331/13897 type: dir pred: 0.0.r529330/64586 count: 529331 text: 529331 13679 205 0 7d8a1dd7679a22169dd6948e39288bbe props: 341041 7130 346 0 8b695b9f61597e4917effffba3bbfaa3 cpath: / copyroot: 0 / minfo-cnt: 56 5-469604.0.t529330-bcfn modify-file true false /head/biology/hyphy/Makefile 8-469604.0.t529330-bcfn modify-file true false /head/biology/hyphy/distinfo i-469604.0.t529330-bcfn modify-file true false /head/biology/hyphy/pkg-plist 13897 14121