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 A ‡ ‚l2subreadENDREP
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SVN  „ ‚n€„ „ x^MPËn«0\ã¯@j–}íªruI0©U ‘í´Ý!†º1vjCª(ê¿_“‡n–ÏÏñÌœ+’Îg$ž °ZbšG=Ï¥á¬1"ôb‚–¹CïƒÛàî7FÖI‚ÞCojõ`*æ…‹%F8v)´Ôíd¡Ñ#L’›Éá"õó»žžêóß?ÀM¢œºqè}~—ÏVmZ0_fÌiè=‹öcºå¦Ñ¦cªâþhÜgR´ªãª¿ö¿¦zÑˆŠõB+Ÿ©Úï†þÔÔÂVzÇÍ€ÍaN\øÅ*Ý=\Ú"A©Ã&‡7ü#<úóŸ¼Ÿ9ãì¬ˆá
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SVN  -/€--TIMESTAMP = 1591305316
SHA256 (subread-2.0.1-source.tar.gz) = d808eb5b1823c572cb45a97c95a3c5acb3d8e29aa47ec74e3ca1eb345787c17b
SIZE (subread-2.0.1-source.tar.gz) = 23260381
ENDREP
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SVN  ž%‰€ž%ž%x^¥WmoÛ6þlý
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DELTA
SVN  ƒJƒL€ƒJƒJ--- HelperFunctions.c.orig	2020-06-04 23:58:40 UTC
+++ HelperFunctions.c
@@ -845,7 +845,7 @@ int strcmp_number(char * s1, char * s2)
 
 int mac_str(char * str_buff)
 {
-#if defined(FREEBSD) || defined(__MINGW32__)
+#if defined(__FreeBSD__) || defined(__MINGW32__)
 	return 1;
 #else
 #ifdef MACOS
@@ -2703,7 +2703,7 @@ void main(){
 
 int get_free_total_mem(size_t * total, size_t * free_mem){
 
-#ifdef FREEBSD
+#ifdef __FreeBSD__
     return -1;
 #endif
 
ENDREP
DELTA
SVN  tv€tt--- core-junction.c.orig	2018-11-08 15:19:02 UTC
+++ core-junction.c
@@ -22,6 +22,7 @@
 #include <string.h>
 #include <ctype.h>
 #include <assert.h>
+#include <unistd.h>
 #include "subread.h"
 #include "sublog.h"
 #include "gene-value-index.h"
ENDREP
DELTA
SVN  ƒ,ƒ.€ƒ,ƒ,--- gene-algorithms.c.orig	2020-06-04 23:57:31 UTC
+++ gene-algorithms.c
@@ -28,7 +28,7 @@
 #include <sys/stat.h>
 #include <sys/types.h>
 
-#ifndef FREEBSD
+#ifndef __FreeBSD__
 #include <sys/timeb.h>
 #endif
 
@@ -1563,7 +1563,7 @@ int load_offsets(gene_offset_t* offsets , const char i
 
 double miltime(){
 	double ret;
-	#ifdef FREEBSD
+	#ifdef __FreeBSD__
 	struct timeval tp;
 	struct timezone tz;
 	tz.tz_minuteswest=0;
ENDREP
DELTA
SVN  ƒƒ€ƒƒ--- input-files.c.orig	2020-06-05 00:33:03 UTC
+++ input-files.c
@@ -48,7 +48,7 @@ FILE * f_subr_open(const char * fname, const char * mo
 #ifdef __MINGW32__
 		return fopen64(fname, mode);
 #else
-#if defined(__LP64__) || defined(_LP64) || defined(MACOS) 
+#if defined(__LP64__) || defined(_LP64) || defined(MACOS) || defined(__FreeBSD__)
 		return fopen(fname, mode);
 #else
 		return fopen64(fname, mode);
ENDREP
DELTA
SVN  JL€JJ--- long-hashtable.c.orig	2020-06-04 23:59:33 UTC
+++ long-hashtable.c
@@ -22,7 +22,7 @@
 #include <string.h>
 
 #ifndef MACOS
-#ifndef FREEBSD
+#ifndef __FreeBSD__
 #include <malloc.h>
 #endif
 #endif
ENDREP
DELTA
SVN  ‚[‚]€‚[‚[--- longread-one/LRMsorted-hashtable.c.orig	2018-11-08 14:47:43 UTC
+++ longread-one/LRMsorted-hashtable.c
@@ -22,11 +22,9 @@
 #include <string.h>
 #include "LRMsorted-hashtable.h"
 
-#ifndef MACOS
-#ifndef FREEBSD
+#if !defined(__APPLE__) && !defined(__FreeBSD__)
 #include <malloc.h>
 #endif
-#endif
 
 #include<math.h>
 #include "LRMfile-io.h"
ENDREP
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SVN  †ƒG€††x^…‘okÛ0Æ_ÇŸâ +¶'c¤Y·°•ÂºûC_
Ç>§Y2Ò¹k<öÝ+Å¦]óf`„îw¾çž;%IÊèƒÅ¢JŒÆì9hŠ¶•ú–©±ò0Éùr“pÿ­¯/óür½_??EŒ±ÿ	D»$+¾xÌŸØí"¸µ®°!no¾}¹[åB¨KÕUïÜÑeél‰éý{ŸB]É:b/uŸ-âÇ×BL²®±µX„cê\dƒû ÆFµ³¼£‚†fÏX™²PxK:¶'æÊó•‰åù›E¾ö£Ô_¿ß>JVÞ(t%¤–$J£	iæ“ãUÄ1œ‚"¨L·WŠ©‚ÙÙüO“[¤mÄ"–Åpwm:‡p@
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DELTA
SVN  fh€ff--- read-repair.c.orig	2018-11-08 15:20:06 UTC
+++ read-repair.c
@@ -3,6 +3,7 @@
 #include <string.h>
 #include <getopt.h>
 #include <zlib.h>
+#include <unistd.h>
 #include "subread.h"
 #include "core.h"
 #include "input-files.h"
ENDREP
DELTA
SVN  mo€mm--- sambam-file.c.orig	2018-11-08 15:20:35 UTC
+++ sambam-file.c
@@ -30,6 +30,7 @@
 #include <string.h>
 #include <assert.h>
 #include <ctype.h>
+#include <unistd.h>
 #include "subread.h"
 #include "core.h"
 #include "gene-algorithms.h"
ENDREP
DELTA
SVN  ‚'‚)€‚'‚'--- sorted-hashtable.c.orig	2018-11-08 03:33:50 UTC
+++ sorted-hashtable.c
@@ -23,11 +23,9 @@
 #include <stdlib.h>
 #include <string.h>
 
-#ifndef MACOS
-#ifndef FREEBSD
+#if !defined(__FreeBSD__) && !defined(__APPLE__)
 #include <malloc.h>
 #endif
-#endif
 
 #include<math.h>
 #include"core.h"
ENDREP
DELTA
SVN  ƒƒ€ƒƒ--- subread.h.orig	2018-11-08 14:46:06 UTC
+++ subread.h
@@ -102,7 +102,7 @@
 
 #define USE_POSIX_MUTEX_LOCK
 
-#if defined(MACOS) || defined(FREEBSD) || defined(USE_POSIX_MUTEX_LOCK)
+#if defined(__APPLE__) || defined(__FreeBSD__) || defined(USE_POSIX_MUTEX_LOCK)
 typedef pthread_mutex_t subread_lock_t;
 #define pthread_spinlock_t pthread_mutex_t
 #define pthread_spin_lock pthread_mutex_lock
ENDREP
DELTA
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DELTA
SVN  }€}}bin/detectionCall
bin/exactSNP
bin/featureCounts
bin/flattenGTF
bin/genRandomReads
bin/propmapped
bin/qualityScores
bin/removeDup
bin/repair
bin/subindel
bin/subjunc
bin/sublong
bin/subread-align
bin/subread-buildindex
bin/subread-fullscan
bin/txUnique
ENDREP
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K 12
Makefile.pkg
V 28
file b-537982.0.r537982/8082
K 23
patch-HelperFunctions.c
V 28
file e-537982.0.r537982/8366
K 21
patch-core-junction.c
V 28
file g-537982.0.r537982/8660
K 23
patch-gene-algorithms.c
V 28
file i-537982.0.r537982/8952
K 19
patch-input-files.c
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file k-537982.0.r537982/9246
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V 28
file m-537982.0.r537982/9536
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